RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 PLAUP00749 431 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 GRB2P62993 217 aaKnown RBP12.6□□□□□ -0.39
BRCA1-223ENST00000494123 UNQ6126/PRO20091Q6UXV3 157 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF295-AS1Q8N0V1 137 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 PAQR4Q8N4S7 273 aaPredicted RBP12.6□□□□□ -0.39
BRCA1-223ENST00000494123 BPIFB6Q8NFQ5 453 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 DCLRE1CQ96SD1 692 aaKnown RBP12.6□□□□□ -0.39
BRCA1-223ENST00000494123 TMEM204Q9BSN7 226 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 MROQ9BYG7 248 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 OR51B6Q9H340 312 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 IKZF2Q9UKS7 526 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 COPS3Q9UNS2 423 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 EXOGQ9Y2C4 368 aaKnown RBP12.6□□□□□ -0.39
BRCA1-223ENST00000494123 GRIP1Q9Y3R0 1128 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 HECTD1Q9ULT8 2610 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 BAHCC1Q9P281 2608 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 CADP27708 2225 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 FAM221AA4D161 298 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 SHISA9B4DS77 424 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ABHD16AO95870 558 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 DBHP09172 617 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 FAM157BP0CG42 384 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 SLC6A9P48067 706 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 TPTEP56180 551 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 SNTB2Q13425 540 aaKnown RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF322Q6U7Q0 402 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 LRRN1Q6UXK5 716 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 RHOUQ7L0Q8 258 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 RFLNBQ8N5W9 214 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 C4orf45Q96LM5 186 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 KCNJ15Q99712 375 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ELOVL3Q9HB03 270 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 A0A1W2PQL4 384 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 DAPL1A0PJW8 107 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 M0R135 149 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 PSMD9O00233 223 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 XPNPEP2O43895 674 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 NR4A1P22736 598 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 OPRL1P41146 370 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 RAD52P43351 418 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 PRKXP51817 358 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 CSNK2BP67870 215 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 C6orf141Q5SZD1 244 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ACBD7Q8N6N7 88 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF283Q8N7M2 679 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 OR52I1Q8NGK6 324 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 IPCEF1Q8WWN9 437 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 AKAP1Q92667 903 aaKnown RBP eCLIP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF799Q96GE5 643 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 MYCBPQ99417 103 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 MRPS18AQ9NVS2 196 aaKnown RBP12.59□□□□□ -0.39
BRCA1-223ENST00000494123 SCN3BQ9NY72 215 aa12.59□□□□□ -0.39
BRCA1-223ENST00000494123 EFCAB10A6NFE3 127 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 DENRO43583 198 aaKnown RBP12.58□□□□□ -0.4
BRCA1-223ENST00000494123 APOC1P02654 83 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 KRT8P05787 483 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 LCKP06239 509 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 PCSK6P29122 969 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 UCP2P55851 309 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 RPS23P62266 143 aaKnown RBP12.58□□□□□ -0.4
BRCA1-223ENST00000494123 HGFACQ04756 655 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 EGR3Q06889 387 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF672Q499Z4 452 aaPredicted RBP12.58□□□□□ -0.4
BRCA1-223ENST00000494123 LAIR2Q6ISS4 152 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 DEGS2Q6QHC5 323 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 VHLLQ6RSH7 139 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF540Q8NDQ6 660 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 NUP37Q8NFH4 326 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 ABHD4Q8TB40 342 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 SNX33Q8WV41 574 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 NEUROG1Q92886 237 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 MRPL48Q96GC5 212 aaKnown RBP12.58□□□□□ -0.4
BRCA1-223ENST00000494123 OR8B4Q96RC9 309 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 BCL2L14Q9BZR8 327 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 UBTD1Q9HAC8 227 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 PLCXD1Q9NUJ7 323 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 SLCO1C1Q9NYB5 712 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 CISD1Q9NZ45 108 aaKnown RBP12.58□□□□□ -0.4
BRCA1-223ENST00000494123 MYRFQ9Y2G1 1151 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 LRP12Q9Y561 859 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 ABCA4P78363 2273 aa12.58□□□□□ -0.4
BRCA1-223ENST00000494123 VSTM5A8MXK1 200 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 J3QRE1 110 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 SLC1A7O00341 560 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 SMPD2O60906 423 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF254O75437 659 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ACSM4P0C7M7 580 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 WNT5AP41221 380 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 CX3CR1P49238 355 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 RGS6P49758 472 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 RIDAP52758 137 aaKnown RBP12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ROM1Q03395 351 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF85Q03923 595 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 MED21Q13503 144 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 DRAM2Q6UX65 266 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 AHSA2Q719I0 299 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 SSX6Q7RTT6 188 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 FAM220AQ7Z4H9 259 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF679Q8IYX0 411 aa12.57□□□□□ -0.4
BRCA1-223ENST00000494123 ZNF101Q8IZC7 436 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms