RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RDH12Q96NR8 316 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 CYB5R1Q9UHQ9 305 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 MOKQ9UQ07 419 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 RNF115Q9Y4L5 304 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 TIMM10BQ9Y5J6 103 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 COMMD3-BMI1R4GMX3 469 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 CSMD2Q7Z408 3487 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 OR6C6A6NF89 314 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 TVP23AA6NH52 213 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 C12orf71A8MTZ7 269 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 E7EQL1 145 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PRR23D1E9PI22 279 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 ATP6V1G2-DDX39BF2Z307 99 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PRODHO43272 600 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 TLX2O43763 284 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 RRP9O43818 475 aaKnown RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 GLCEO94923 617 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PRR23D2P0DMB1 279 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 CAPZA2P47755 286 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 NKX6-1P78426 367 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 AQP6Q13520 282 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 LRRC36Q1X8D7 754 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 ZNF672Q499Z4 452 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 SLC25A30Q5SVS4 291 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 SLC18B1Q6NT16 456 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 ZNF774Q6NX45 483 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 TMEM53Q6P2H8 277 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 ZNF771Q7L3S4 317 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 VASH1Q7L8A9 365 aaPredicted RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 CXXC5Q7LFL8 322 aaKnown RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 TIGD4Q8IY51 512 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 GALNT4Q8N4A0 578 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 TCEANCQ8N8B7 351 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PROKR2Q8NFJ6 384 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 OR10S1Q8NGN2 331 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 NRGNQ92686 78 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 POM121L2Q96KW2 1035 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 LIME1Q9H400 295 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 WDR76Q9H967 626 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PNRC2Q9NPJ4 139 aaKnown RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 C8orf4Q9NR00 106 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 FAM118AQ9NWS6 357 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 ASH2LQ9UBL3 628 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 FBXL3Q9UKT7 428 aa10.75□□□□□ -0.69
USP40-205ENST00000430158 PRRC2AP48634 2157 aaKnown RBP10.75□□□□□ -0.69
USP40-205ENST00000430158 AKAP9Q99996 3911 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 RER1O15258 196 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 SYNGR3O43761 229 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 ICMTO60725 284 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 RAB36O95755 333 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 PAICSP22234 425 aaKnown RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 APEX1P27695 318 aaKnown RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 GUCA1AP43080 201 aaPredicted RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 CENPAP49450 140 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 PCBD1P61457 104 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 SNRPGP62308 76 aaKnown RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 ADARB1P78563 741 aaKnown RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 MSMPQ1L6U9 139 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 SLC35D3Q5M8T2 416 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 CORO6Q6QEF8 472 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 CFAP77Q6ZQR2 320 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 IL17RDQ8NFM7 739 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 OR8J1Q8NGP2 316 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 MAP6Q96JE9 813 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 RADILQ96JH8 1075 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 LURAP1Q96LR2 239 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 IL4I1Q96RQ9 567 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 TEAD3Q99594 435 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 OR51V1Q9H2C8 321 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 CCNB1IP1Q9NPC3 277 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 SMPD3Q9NY59 655 aaPredicted RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 KCNG2Q9UJ96 466 aa10.74□□□□□ -0.69
USP40-205ENST00000430158 CHD3Q12873 2000 aaKnown RBP10.74□□□□□ -0.69
USP40-205ENST00000430158 HS3ST1O14792 307 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 SGCEO43556 437 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 DANCRP0C864 163 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 COX5BP10606 129 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 CCL2P13500 99 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 NR4A1P22736 598 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 GSTT1P30711 240 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 FMO3P31513 532 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 RPS27P42677 84 aaKnown RBP10.73□□□□□ -0.69
USP40-205ENST00000430158 SMCPP49901 116 aaPredicted RBP10.73□□□□□ -0.69
USP40-205ENST00000430158 BLVRAP53004 296 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 SCRN3Q0VDG4 424 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 NXNL2Q5VZ03 156 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 MEPCEQ7L2J0 689 aaKnown RBP10.73□□□□□ -0.69
USP40-205ENST00000430158 TMEM200AQ86VY9 491 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 LINC00346Q8IVM7 164 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 SLC30A7Q8NEW0 376 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 NUP37Q8NFH4 326 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 RHOXF1Q8NHV9 184 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 ST7LQ8TDW4 575 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 TRUB1Q8WWH5 349 aaKnown RBP10.73□□□□□ -0.69
USP40-205ENST00000430158 AKAP1Q92667 903 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP40-205ENST00000430158 ZMYND19Q96E35 227 aaPredicted RBP10.73□□□□□ -0.69
USP40-205ENST00000430158 PLEKHA8Q96JA3 519 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 TEX12Q9BXU0 123 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 KCNN2Q9H2S1 579 aa10.73□□□□□ -0.69
USP40-205ENST00000430158 RNF121Q9H920 327 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms