RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	DUSP7	Q16829	419 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	MTX3	Q5HYI7	312 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	C10orf128	Q5T292	105 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	MAVS	Q7Z434	540 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	HDDC2	Q7Z4H3	204 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZER1	Q7Z7L7	766 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ALDH16A1	Q8IZ83	802 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF283	Q8N7M2	679 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	NOXO1	Q8NFA2	376 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	OR6T1	Q8NGN1	323 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	AKR7L	Q8NHP1	331 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ABHD4	Q8TB40	342 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ADAMTS16	Q8TE57	1224 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	SAMD8	Q96LT4	415 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	SEPHS2	Q99611	448 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	DCAF16	Q9NXF7	216 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC7A7	Q9UM01	511 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	CORO2B	Q9UQ03	480 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	MMP24	Q9Y5R2	645 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	CMYA5	Q8N3K9	4069 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689		A0A1B0GUS0	222 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	TRAPPC13	A5PLN9	417 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689		A8MXK9	166 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689		M0QX08	132 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	TIMM8A	O60220	97 aa	Predicted RBP	10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	KNG1	P01042	644 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	NGF	P01138	241 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	F13B	P05160	661 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	PPIAL4G	P0DN37	164 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	TNFRSF1A	P19438	455 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	TNFSF4	P23510	183 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	OMG	P23515	440 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	CD80	P33681	288 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	UGT2B15	P54855	530 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	SEC61A1	P61619	476 aa	Known RBP	10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	BTG1	P62324	171 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	HNRNPA0	Q13151	305 aa	Known RBP	10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	NPTX1	Q15818	432 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	ESCO2	Q56NI9	601 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	PAGE3	Q5JUK9	113 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	BLOC1S3	Q6QNY0	202 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	C9orf139	Q6ZV77	190 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	SPATC1	Q76KD6	591 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	NANOGNB	Q7Z5D8	188 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	JAZF1	Q86VZ6	243 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	FUNDC1	Q8IVP5	155 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	ASB10	Q8WXI3	467 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	SPDL1	Q96EA4	605 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	MPP4	Q96JB8	637 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	NANOG	Q9H9S0	305 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	ELOVL3	Q9HB03	270 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	OR5V1	Q9UGF6	321 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	IL20RA	Q9UHF4	553 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	ANGPT4	Q9Y264	503 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	UGT2A1	Q9Y4X1	527 aa		10.65	□□□□□ -0.7
SHMT2-223	ENST00000556689	IGHV3OR16-10	A0A075B7F0	116 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689		F5H0A9	414 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	EBAG9	O00559	213 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	SLC2A10	O95528	541 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	IGHV4-38-2	P0DP08	117 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	FUT1	P19526	365 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	MRPL19	P49406	292 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	DAP3	P51398	398 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	ERVK-25	P63136	954 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	RPL18	Q07020	188 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	SRSF4	Q08170	494 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	PSG7	Q13046	419 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZNF362	Q5T0B9	420 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	FAM27B	Q5VT28	67 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	ARL9	Q6T311	187 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	BTNL3	Q6UXE8	466 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	LRRN1	Q6UXK5	716 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	C17orf107	Q6ZR85	190 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	RFPL4B	Q6ZWI9	263 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	RBM45	Q8IUH3	476 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	PARP8	Q8N3A8	854 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	KIR3DL3	Q8N743	410 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	C11orf65	Q8NCR3	313 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	GPR32P1	Q8NGA4	272 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	NSMAF	Q92636	917 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	NABP1	Q96AH0	204 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	CMTM5	Q96DZ9	223 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	C4orf45	Q96LM5	186 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZNF426	Q9BUY5	554 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	IKZF5	Q9H5V7	419 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	SMURF2	Q9HAU4	748 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	BEX1	Q9HBH7	125 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	MEPE	Q9NQ76	525 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	INIP	Q9NRY2	104 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	MAN2C1	Q9NTJ4	1040 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	CCDC167	Q9P0B6	97 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	PDP1	Q9P0J1	537 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	STX18	Q9P2W9	335 aa	Known RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	TIMM10B	Q9Y5J6	103 aa		10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	SOX21	Q9Y651	276 aa	Predicted RBP	10.64	□□□□□ -0.71
SHMT2-223	ENST00000556689	TRBV5-3	A0A0A0MS03	114 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ANGPT2	O15123	496 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	RRP9	O43818	475 aa	Known RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ICMT	O60725	284 aa		10.63	□□□□□ -0.71

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