RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CCNOP22674 350 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 STOMP27105 288 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 NOS3P29474 1203 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 RASSF2P50749 326 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 EFNA4P52798 201 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 PCBD1P61457 104 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 SLC35F1Q5T1Q4 408 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 ZNF774Q6NX45 483 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 TMEM179BQ7Z7N9 219 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 LRP11Q86VZ4 500 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 JAZF1Q86VZ6 243 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 GLB1L2Q8IW92 636 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 OR10G2Q8NGC3 310 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 OR52L1Q8NGH7 329 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 POM121L2Q96KW2 1035 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 SYT3Q9BQG1 590 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 DGCR6LQ9BY27 220 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 LRMDAQ9H2I8 198 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 SRA1Q9HD15 236 aaKnown RBP13.42□□□□□ -0.26
HMGA1-206ENST00000478214 IL20Q9NYY1 176 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 FZR1Q9UM11 496 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 IGLV1-36A0A0B4J1U3 117 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 BHLHE40O14503 412 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 GNGT2O14610 69 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 IDH3BO43837 385 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 FKBP6O75344 327 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SOX14O95416 240 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 F12P00748 615 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-206ENST00000478214 RENP00797 406 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 CRABP1P29762 137 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 CENPAP49450 140 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 PPOXP50336 477 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 GDI2P50395 445 aaKnown RBP13.41□□□□□ -0.26
HMGA1-206ENST00000478214 ERVS71-1P61550 626 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 RPS23P62266 143 aaKnown RBP13.41□□□□□ -0.26
HMGA1-206ENST00000478214 GK3PQ14409 553 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 RPL13AP3Q6NVV1 102 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 DNM1P34Q6PK57 102 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SYT9Q86SS6 491 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 ALDH16A1Q8IZ83 802 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 OR6V1Q8N148 313 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 ZCCHC24Q8N2G6 241 aaKnown RBP13.41□□□□□ -0.26
HMGA1-206ENST00000478214 ZNF525Q8N782 197 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SDR9C7Q8NEX9 313 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 OR52E2Q8NGJ4 325 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 GIPC3Q8TF64 312 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 C11orf40Q8WZ69 217 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SLCO4A1Q96BD0 722 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SNX18Q96RF0 628 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 NIPSNAP1Q9BPW8 284 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 TBC1D23Q9NUY8 699 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 B9D1Q9UPM9 204 aa13.41□□□□□ -0.26
HMGA1-206ENST00000478214 SETD2Q9BYW2 2564 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-206ENST00000478214 ZANQ9Y493 2812 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 CSPG4Q6UVK1 2322 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 IGHV4-30-2A0A087WSY4 118 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 C5orf49A4QMS7 147 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 OR6C68A6NDL8 312 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 RNF223E7ERA6 249 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 TP53P04637 393 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 HOXB6P17509 224 aaKnown RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 GSTM3P21266 225 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 PCSK6P29122 969 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 WNT5AP41221 380 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 UCP2P55851 309 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 CBX1P83916 185 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 MEP1BQ16820 701 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 CLEC2AQ6UVW9 174 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 BIVMQ86UB2 503 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 MAPK1IP1LQ8NDC0 245 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 PAPD5Q8NDF8 572 aaKnown RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 NPEPL1Q8NDH3 523 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 ICA1LQ8NDH6 482 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 FEVQ99581 238 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 TSSK6Q9BXA6 273 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 REG4Q9BYZ8 158 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 FN3KQ9H479 309 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 DYNLRB1Q9NP97 96 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 RPRD1BQ9NQG5 326 aaKnown RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 MYEF2Q9P2K5 600 aaKnown RBP13.4□□□□□ -0.26
HMGA1-206ENST00000478214 ASH2LQ9UBL3 628 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 DUSP13Q9UII6 198 aa13.4□□□□□ -0.26
HMGA1-206ENST00000478214 FAM171A2A8MVW0 826 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 SYNGR3O43761 229 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 CLPTM1O96005 669 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 LCKP06239 509 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 ADRA2AP08913 450 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 GAAP10253 952 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 RAD52P43351 418 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 EVX1P49640 407 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 LSM6P62312 80 aaKnown RBP13.39□□□□□ -0.27
HMGA1-206ENST00000478214 SCRN3Q0VDG4 424 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 AQP6Q13520 282 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 MAD2L1BPQ15013 274 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-206ENST00000478214 KCNMB1Q16558 191 aa13.39□□□□□ -0.27
HMGA1-206ENST00000478214 ZNF362Q5T0B9 420 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-206ENST00000478214 RGS7BPQ6MZT1 257 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-206ENST00000478214 ZNF101Q8IZC7 436 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms