RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NXF5Q9H1B4 397 aaKnown RBP18.89■□□□□ 0.61
CTCF-202ENST00000401394 MRPL22Q9NWU5 206 aaKnown RBP18.89■□□□□ 0.61
CTCF-202ENST00000401394 SLC39A1Q9NY26 324 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 LOC100289279A0A1B0GTE1 492 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 A0A1W2PPC1 479 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 H0YIG0 161 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 EIF1AYO14602 144 aaKnown RBP18.88■□□□□ 0.61
CTCF-202ENST00000401394 IL11P20809 199 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 VAMP1P23763 118 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 CD34P28906 385 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 TMEM225Q6GV28 225 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 C13orf42A0A1B0GVH6 325 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 HLA-DOBP13765 273 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 CTLA4P16410 223 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 CNR1P21554 472 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 DLSTP36957 453 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 GPR119Q8TDV5 335 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 CPNE2Q96FN4 548 aaPredicted RBP18.88■□□□□ 0.61
CTCF-202ENST00000401394 DGAT2Q96PD7 388 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 GAL3ST4Q96RP7 486 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 OR11A1Q9GZK7 315 aa18.88■□□□□ 0.61
CTCF-202ENST00000401394 FADS1O60427 444 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 AKR1C4P17516 323 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 EIF2B5Q13144 721 aaKnown RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 KLHL26Q53HC5 615 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 MANEAQ5SRI9 462 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR4D6Q8NGJ1 314 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR2I1PQ8NGU4 316 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR10Z1Q8NGY1 313 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 PNO1Q9NRX1 252 aaKnown RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 FRYLO94915 3013 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 C2orf72A6NCS6 295 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 EFCAB7A8K855 629 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 NDUFA2O43678 99 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 ATG12O94817 140 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 KLF8O95600 359 aaPredicted RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 HOXB2P14652 356 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 PI3P19957 117 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 CDNFQ49AH0 187 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 TMEM184AQ6ZMB5 413 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 LDLRAD3Q86YD5 345 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR13H1Q8NG92 308 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 PAQR8Q8TEZ7 354 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 ASB5Q8WWX0 329 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 MRPL48Q96GC5 212 aaKnown RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 SLC7A5P2Q9GIP4 190 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR8D2Q9GZM6 311 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 PRTFDC1Q9NRG1 225 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 EMC9Q9Y3B6 208 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 TMEM212A6NML5 194 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 C2orf74A8MZ97 194 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 F5H0A9 414 aaPredicted RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 SLC17A2O00624 439 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OR2T1O43869 369 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 ACTL6AO96019 429 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 PPIAP62937 165 aaKnown RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 CXADRP78310 365 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 TMEM71Q6P5X7 295 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 Q6ZSR6 202 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 OTOSQ8NHW6 89 aa18.87■□□□□ 0.61
CTCF-202ENST00000401394 HOXB13Q92826 284 aaPredicted RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 MMABQ96EY8 250 aaPredicted RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 SLC25A44Q96H78 314 aaPredicted RBP18.87■□□□□ 0.61
CTCF-202ENST00000401394 ABCD4O14678 606 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 CDC40O60508 579 aaKnown RBP eCLIP18.86■□□□□ 0.61
CTCF-202ENST00000401394 SRPX2O60687 465 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 AQP8O94778 261 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 CA3P07451 260 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 MGMTP16455 207 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 FMODQ06828 376 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 SKP2Q13309 424 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 PLEKHN1Q494U1 663 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 EEF1A1P5Q5VTE0 462 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 SLC22A18ASQ8N1D0 253 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 SELENOIQ9C0D9 397 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 SEMA6CQ9H3T2 930 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 MBD2Q9UBB5 411 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 SLC5A6Q9Y289 635 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 KANTRA0A1W2PQU2 76 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 MPTX1A8MV57 137 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 ZNF736B4DX44 427 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 GP1BAP07359 652 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 EIF1AXP47813 144 aaKnown RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 INSM1Q01101 510 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 SLC17A1Q14916 467 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 C11orf87Q6NUJ2 197 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 MOB3CQ70IA8 216 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 SLC41A2Q96JW4 573 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 GPX7Q96SL4 187 aaPredicted RBP18.86■□□□□ 0.61
CTCF-202ENST00000401394 POLE3Q9NRF9 147 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 TNFSF18Q9UNG2 199 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 DMDP11532 3685 aa18.86■□□□□ 0.61
CTCF-202ENST00000401394 A0A0J9YY10 115 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 DISC1C4P0D8 188 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 LINC01565O15544 149 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 HCRTR2O43614 444 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 HTR2CP28335 458 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 SLC25A1P53007 311 aa18.85■□□□□ 0.61
CTCF-202ENST00000401394 ADAM8P78325 824 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms