RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SLC38A5Q8WUX1 472 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MCHR2Q969V1 340 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 STACQ99469 402 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NAT8Q9UHE5 227 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GPR34Q9UPC5 381 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TNRC6CQ9HCJ0 1690 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TARM1B6A8C7 271 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CBX7O95931 251 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CD14P08571 375 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RAB28P51157 221 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SUCLG1P53597 346 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 INPP5JQ15735 1006 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FA2HQ7L5A8 372 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CERS5Q8N5B7 392 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 BEND2Q8NDZ0 799 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PMCHL2Q9BQD1 86 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SORBS1Q9BX66 1292 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FKBP11Q9NYL4 201 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CNIH4Q9P003 139 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FOXJ3Q9UPW0 622 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DSCR3O14972 297 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LAG3P18627 525 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LMO2P25791 158 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RPL34P49207 117 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 P2RX1P51575 399 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ATP6V1FQ16864 119 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MOB3CQ70IA8 216 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR13C9Q8NGT0 318 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RPUSD4Q96CM3 377 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 KTI12Q96EK9 354 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NKX3-1Q99801 234 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 WDR77Q9BQA1 342 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GPR174Q9BXC1 333 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CPEB1Q9BZB8 566 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DEC1Q9P2X7 70 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NPIPB8E9PQR5 432 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PMP2P02689 132 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CTSAP10619 480 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MYOGP15173 224 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 BTF3P20290 206 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NKX2-1P43699 371 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR8G1Q15617 311 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SLC35G1Q2M3R5 365 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PKDCCQ504Y2 493 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 C9orf152Q5JTZ5 239 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RNF111Q6ZNA4 994 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PRRX2Q99811 253 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR10A2Q9H208 303 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NKX2-4Q9H2Z4 354 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FBRSQ9HAH7 460 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ARFGEF2Q9Y6D5 1785 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TEX50A0A1B0GTY4 177 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DBHP09172 617 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SERPINA2P20848 420 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RPL29P47914 159 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 HSD17B7P56937 341 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ACY1Q03154 408 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SGCAQ16586 387 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM184AQ6ZMB5 413 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF596Q8TC21 504 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC4CQ8WTT0 213 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DDIT4LQ96D03 193 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 APIPQ96GX9 242 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NAA11Q9BSU3 229 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 HAO2Q9NYQ3 351 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ENTPD2Q9Y5L3 495 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 C7orf77A4D0Y5 90 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CEBPZOSA8MTT3 80 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 WDR1O75083 606 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 IGHA2P01877 340 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 OR7E24Q6IFN5 339 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SUMF1Q8NBK3 374 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC1AQ8NC01 280 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FAM110BQ8TC76 370 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RXFP4Q8TDU9 374 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 EMID1Q96A84 441 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ZMYND19Q96E35 227 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ATP5SQ99766 215 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ALG12Q9BV10 488 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MRPS18AQ9NVS2 196 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 KIAA1456Q9P272 454 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ABI3Q9P2A4 366 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 IGKV6D-21A0A0A0MT36 114 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FAM227AF5H4B4 570 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 UBE2G2P60604 165 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FKBP1BP68106 108 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FOXK2Q01167 660 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TEAD2Q15562 447 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM241Q24JQ0 296 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PSAPL1Q6NUJ1 521 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLC6A18Q96N87 628 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLC25A18Q9H1K4 315 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLEKHJ1Q9NW61 149 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 UQCR10Q9UDW1 63 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLEKHB1Q9UF11 243 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 NDOR1Q9UHB4 597 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 VAX2Q9UIW0 290 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 A0A0B4J203 849 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MAP1LC3B2A6NCE7 125 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms