RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CAPZA1P52907 286 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 BVESQ8NE79 360 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ZBTB8AQ96BR9 441 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ADAT1Q9BUB4 502 aaKnown RBP13.14□□□□□ -0.31
VPS35-210ENST00000568784 TBL1XR1Q9BZK7 514 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 HPF1Q9NWY4 346 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 FREM3P0C091 2139 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 IL12BP29460 328 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ACTBP60709 375 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ACTG1P63261 375 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 STK11Q15831 433 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ZCCHC12Q6PEW1 402 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 NPSR1Q6W5P4 371 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 MCATQ8IVS2 390 aaKnown RBP13.14□□□□□ -0.31
VPS35-210ENST00000568784 ZNF101Q8IZC7 436 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 GALNT16Q8N428 558 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 OR13C3Q8NGS6 347 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 CMBLQ96DG6 245 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 FAM74A7A6NL05 159 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 AGPAT2O15120 278 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 SRPX2O60687 465 aaPredicted RBP13.14□□□□□ -0.31
VPS35-210ENST00000568784 OPN1LWP04000 364 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 AVPR2P30518 371 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ZNF273Q14593 569 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 FAM74A3Q4VXF1 159 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ZNF660Q6AZW8 331 aaPredicted RBP13.14□□□□□ -0.31
VPS35-210ENST00000568784 CMIPQ8IY22 773 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 PHYHIPQ92561 330 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 FGF14Q92915 247 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 MARVELD3Q96A59 401 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 PNPLA2Q96AD5 504 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 SPACA5Q96QH8 159 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ANKRD10Q9NXR5 420 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 OR5H14A6NHG9 310 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 ZNF705EA8MWA4 302 aaPredicted RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 CPN1P15169 458 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 ZNF823P16415 610 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 RPS4Y1P22090 263 aaKnown RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 PRMT2P55345 433 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 EIF2B5Q13144 721 aaKnown RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 ALG11Q2TAA5 492 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 SLC35D3Q5M8T2 416 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 BAHD1Q8TBE0 780 aaPredicted RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 EMC9Q9Y3B6 208 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 ETV7Q9Y603 341 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 TMEM14AQ9Y6G1 99 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 OBSL1O75147 1896 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 C2orf72A6NCS6 295 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 IL5P05113 134 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 S1PR1P21453 382 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 SDHAP31040 664 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 OR1D4P47884 311 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 WBP2NLQ6ICG8 309 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 SHISA6Q6ZSJ9 500 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 EID2Q8N6I1 236 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 C5orf34Q96MH7 638 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 GSKIPQ9P0R6 139 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 RABL2AQ9UBK7 228 aaPredicted RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 TMEM212A6NML5 194 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 KCNJ13O60928 360 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 FARS2O95363 451 aaKnown RBP13.13□□□□□ -0.31
VPS35-210ENST00000568784 IL13RA1P78552 427 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 OR52W1Q6IF63 320 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 TMPRSS9Q7Z410 1059 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 OR51A2Q8NGJ7 313 aa13.13□□□□□ -0.31
VPS35-210ENST00000568784 EFCAB7A8K855 629 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 COL9A1P20849 921 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 RIDAP52758 137 aaKnown RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 UBE2IP63279 158 aaKnown RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 CORO6Q6QEF8 472 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 TMEM17Q86X19 198 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 OR13H1Q8NG92 308 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 NUDCD2Q8WVJ2 157 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 ZNF768Q9H5H4 540 aaKnown RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 B9D1Q9UPM9 204 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 NPTNQ9Y639 398 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 OR4C45A6NMZ5 311 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 CTRB1P17538 263 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 HTR2CP28335 458 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 TAS2R19P59542 299 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 CTRB2Q6GPI1 263 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 TMEM184AQ6ZMB5 413 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 MAP3K3Q99759 626 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 ELL3Q9HB65 397 aaPredicted RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 ARPC3O15145 178 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 HNRNPA2B1P22626 353 aaKnown RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 AKT2P31751 481 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 ARRB1P49407 418 aaPredicted RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 NR0B1P51843 470 aaKnown RBP13.12□□□□□ -0.31
VPS35-210ENST00000568784 RASGEF1BQ0VAM2 473 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 MGAT2Q10469 447 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 ZNF74Q16587 644 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 LINC01590Q5TEZ4 76 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 TTLL10Q6ZVT0 673 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 PPP1R1CQ8WVI7 109 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 TGM7Q96PF1 710 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 SARGQ9BW04 601 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 OR11A1Q9GZK7 315 aa13.12□□□□□ -0.31
VPS35-210ENST00000568784 MSRAQ9UJ68 235 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms