RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 UTP23Q9BRU9 249 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NICN1Q9BSH3 213 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 COPS4Q9BT78 406 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM121Q9BTD3 319 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAIM2Q9BWQ8 316 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALN1Q9BXU9 219 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 UCK2Q9BZX2 261 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTR3CQ9C0K3 210 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAA50Q9GZZ1 169 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TOLLIPQ9H0E2 274 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SHARPINQ9H0F6 387 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPDPFQ9H3Y8 114 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf198Q9H425 327 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLIPR2Q9H4G4 154 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IKZF5Q9H5V7 419 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FNDC4Q9H6D8 234 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR55Q9H6Y2 383 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NT5DC2Q9H857 520 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DDX31Q9H8H2 851 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PELI2Q9HAT8 420 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELL3Q9HB65 397 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PATZ1Q9HBE1 687 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C3orf14Q9HBI5 128 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMBIM4Q9HC24 238 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HRASLSQ9HDD0 168 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC40A1Q9NP59 571 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF20Q9NP95 211 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NRN1Q9NPD7 142 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASCL3Q9NQ33 180 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRSS16Q9NQE7 514 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 EXOSC3Q9NQT5 275 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABCB10Q9NRK6 738 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 INPP5EQ9NRR6 644 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPANXB1Q9NS25 103 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NECAP2Q9NVZ3 263 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MCUBQ9NWR8 336 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAK1IP1Q9NWT1 392 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLN6Q9NWW5 311 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HRASLS2Q9NWW9 162 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 THUMPD1Q9NXG2 353 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAQR5Q9NXK6 330 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 B3GNT2Q9NY97 397 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAS2R9Q9NYW1 312 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 STMN3Q9NZ72 180 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 EHFQ9NZC4 300 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF224Q9NZL3 707 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAT2BQ9NZL9 334 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 B4GALT7Q9UBV7 327 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLK11Q9UBX7 282 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEC14L4Q9UDX3 406 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCDC2Q9UHG0 476 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLEC2DQ9UHP7 191 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRO0461Q9UI25 63 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 BTNL2Q9UIR0 455 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C3orf18Q9UK00 162 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NXT1Q9UKK6 140 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB23Q9ULC3 237 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLEC4EQ9ULY5 219 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TP53TG3Q9ULZ0 132 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCML1Q9UN30 329 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAF1Q9UNN5 650 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAMD4AQ9UPU9 718 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A13Q9Y226 551 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDE10AQ9Y233 779 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASF1AQ9Y294 204 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RCL1Q9Y2P8 373 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS28Q9Y2Q9 187 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCNIP3Q9Y2W7 256 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 YARS2Q9Y2Z4 477 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPS18CQ9Y3D5 142 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2W1Q9Y3N9 320 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL36Q9Y3U8 105 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 L3MBTL1Q9Y468 752 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLR3HQ9Y535 204 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 INSL5Q9Y5Q6 135 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSSC4Q9Y5U2 329 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTGDR2Q9Y5Y4 395 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 USH1CQ9Y6N9 552 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 V9GYQ6 96 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FNDC1Q4ZHG4 1894 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCRIBQ14160 1630 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CAMSAP1Q5T5Y3 1602 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNAPC4Q5SXM2 1469 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZFYVE9O95405 1425 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADGRL3Q9HAR2 1447 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NCOA3Q9Y6Q9 1424 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAF1P21675 1872 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 METP08581 1390 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIF24Q5T7B8 1368 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABCC11Q96J66 1382 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CACNA1IQ9P0X4 2223 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELP1O95163 1332 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MN1Q10571 1320 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 STK36Q9NRP7 1315 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAPK8IP3Q9UPT6 1336 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV7-46A0A075B6I9 117 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV5-52A0A0A0MRZ9 124 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0A6YYD5 115 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF816-ZNF321PA0A0X1KG74 233 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms