RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MEPEQ9NQ76 525 aaPredicted RBP16.32■□□□□ 0.2
VPS35-202ENST00000561713 M0R233 179 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 UBL3O95164 117 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 ERCC1P07992 297 aaPredicted RBP16.31■□□□□ 0.2
VPS35-202ENST00000561713 PGA4P0DJD7 388 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 PGA3P0DJD8 388 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 GKAP1Q5VSY0 366 aaPredicted RBP16.31■□□□□ 0.2
VPS35-202ENST00000561713 REP15Q6BDI9 236 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 NANOGP8Q6NSW7 305 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 LRFN4Q6PJG9 635 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 NKAIN4Q8IVV8 208 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 SLC30A8Q8IWU4 369 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 IL17RDQ8NFM7 739 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 UBASH3BQ8TF42 649 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 TMEM255BQ8WV15 326 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 ZNF566Q969W8 418 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 ZNF347Q96SE7 839 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 NANOGQ9H9S0 305 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 TMEM38BQ9NVV0 291 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 ZNF229Q9UJW7 825 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 SH3GLB1Q9Y371 365 aa16.31■□□□□ 0.2
VPS35-202ENST00000561713 PIP5K1CO60331 668 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 NCR1O76036 304 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 F13BP05160 661 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 ASAH2BP0C7U1 165 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 FAM157BP0CG42 384 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 H2AFXP16104 143 aaPredicted RBP16.3■□□□□ 0.2
VPS35-202ENST00000561713 CDH15P55291 814 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 ERVS71-1P61550 626 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 GALK2Q01415 458 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 RPL18Q07020 188 aaKnown RBP16.3■□□□□ 0.2
VPS35-202ENST00000561713 INTS11Q5TA45 600 aaKnown RBP16.3■□□□□ 0.2
VPS35-202ENST00000561713 RINLQ6ZS11 566 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 SNX32Q86XE0 403 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 ZNF786Q8N393 782 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 SLC22A24Q8N4F4 322 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 NOXO1Q8NFA2 376 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 OR4K5Q8NGD3 323 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 PCDHAC1Q9H158 963 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 OCEL1Q9H607 264 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 C20orf141Q9NUB4 165 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 REV1Q9UBZ9 1251 aa16.3■□□□□ 0.2
VPS35-202ENST00000561713 A0A1W2PPW3 197 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 VSTM5A8MXK1 200 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 MCIDASD6RGH6 385 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 BLOC1S5-TXNDC5H3BN57 136 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 MRASO14807 208 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 DHHO43323 396 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 SPRY1O43609 319 aaPredicted RBP16.29■□□□□ 0.2
VPS35-202ENST00000561713 SYNGR3O43761 229 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 VENTXO95231 258 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 HPXP02790 462 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 QDPRP09417 244 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 FUT1P19526 365 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 GLRXP35754 106 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 OR1E2P47887 323 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 CLRN1P58418 232 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 TAS2R41P59536 307 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 ZP4Q12836 540 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 RIN1Q13671 783 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 FXNQ16595 210 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 LRRC23Q53EV4 343 aaPredicted RBP16.29■□□□□ 0.2
VPS35-202ENST00000561713 CGB2Q6NT52 195 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 CALHM3Q86XJ0 350 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 SYT14Q8NB59 555 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 TSPEARQ8WU66 669 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 SLC25A44Q96H78 314 aaPredicted RBP16.29■□□□□ 0.2
VPS35-202ENST00000561713 MPP4Q96JB8 637 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 VIPAS39Q9H9C1 493 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 FGFR1OP2Q9NVK5 253 aa16.29■□□□□ 0.2
VPS35-202ENST00000561713 GMPR2Q9P2T1 348 aaKnown RBP16.29■□□□□ 0.2
VPS35-202ENST00000561713 BCL10O95999 233 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 HIST1H2ABP04908 130 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 NAT2P11245 290 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 AQP2P41181 271 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 ELFN2Q5R3F8 820 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 CCDC80Q76M96 950 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 HIST3H2AQ7L7L0 130 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 SLC30A7Q8NEW0 376 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 MOSPD2Q8NHP6 518 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 ASB10Q8WXI3 467 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 HIST1H2ACQ93077 130 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 LRRC58Q96CX6 371 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 TSPAN32Q96QS1 320 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 SIKE1Q9BRV8 207 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 SLC19A3Q9BZV2 496 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 DUSP13Q9UII6 198 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 METRNQ9UJH8 293 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 FBXO9Q9UK97 447 aaPredicted RBP16.28■□□□□ 0.2
VPS35-202ENST00000561713 SPEF1Q9Y4P9 236 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 WNK2Q9Y3S1 2297 aa16.28■□□□□ 0.2
VPS35-202ENST00000561713 OR7A10O76100 309 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 SLC2A10O95528 541 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 IGHG1P01857 330 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 OR8G3PP0DMU2 310 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 FUT4P22083 530 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 DVL1P1P54792 670 aaPredicted RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 RPS23P62266 143 aaKnown RBP16.27■□□□□ 0.2
VPS35-202ENST00000561713 GLO1Q04760 184 aa16.27■□□□□ 0.2
VPS35-202ENST00000561713 FMODQ06828 376 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms