RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RUNDC3AQ59EK9 446 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ELFN2Q5R3F8 820 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 AGBL2Q5U5Z8 902 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 LINC00114Q6XXX2 140 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 WDR88Q6ZMY6 472 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 PXKQ7Z7A4 578 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 LRP11Q86VZ4 500 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 CARM1Q86X55 608 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 PTOV1Q86YD1 416 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ARMC8Q8IUR7 673 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SKA3Q8IX90 412 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 LINC01356Q8N9X3 169 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 HIPK4Q8NE63 616 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 GPR32P1Q8NGA4 272 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 OR4D11Q8NGI4 311 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 OR6N1Q8NGY5 312 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 FGFBP3Q8TAT2 258 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 MRPL24Q96A35 216 aaKnown RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 C1orf159Q96HA4 380 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SNX18Q96RF0 628 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ZNF607Q96SK3 696 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 MCHR1Q99705 422 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ARHGDIGQ99819 225 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 FOXB1Q99853 325 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SYT3Q9BQG1 590 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 CPPED1Q9BRF8 314 aaPredicted RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 TMEM43Q9BTV4 400 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ULBP2Q9BZM5 246 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 B3GAT2Q9NPZ5 323 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 SLC13A4Q9UKG4 626 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 HIF3AQ9Y2N7 669 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 MXRA5Q9NR99 2828 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 CUBNO60494 3623 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 M0R233 179 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 SYNGR3O43761 229 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 CH25HO95992 272 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 HPXP02790 462 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 ADORA3P0DMS8 318 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 ALDH3B1P43353 468 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 CSNK1A1P48729 337 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 EVX1P49640 407 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 ATP4BP51164 291 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 CDH15P55291 814 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 BIDP55957 195 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 PCBP3P57721 371 aaKnown RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 CCNIQ14094 377 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 SELPLGQ14242 412 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 MAD2L1BPQ15013 274 aaPredicted RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 TRMT5Q32P41 509 aaKnown RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 ZNF613Q6PF04 617 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 RANBP3LQ86VV4 465 aaPredicted RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 TSPYL5Q86VY4 417 aaPredicted RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 RBM45Q8IUH3 476 aaKnown RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 ZNF584Q8IVC4 421 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 LILRB2Q8N423 598 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 LRRC17Q8N6Y2 441 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 BHLHE22Q8NFJ8 381 aaPredicted RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 OR6T1Q8NGN1 323 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 OR5J2Q8NH18 312 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 LRRC8CQ8TDW0 803 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 TMEM54Q969K7 222 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 MS4A5Q9H3V2 200 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 EVA1AQ9H8M9 152 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 TAS2R5Q9NYW4 299 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 MYEF2Q9P2K5 600 aaKnown RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 TMEFF2Q9UIK5 374 aaPredicted RBP7.27□□□□□ -1.25
USP28-215ENST00000545608 FZR1Q9UM11 496 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 CORO2BQ9UQ03 480 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 ANGPT4Q9Y264 503 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 SPEF1Q9Y4P9 236 aa7.27□□□□□ -1.25
USP28-215ENST00000545608 CPSF4LA6NMK7 179 aaKnown RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 WNT9BO14905 357 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 CHP2O43745 196 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 FMO6PO60774 539 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 DEAF1O75398 565 aaPredicted RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 UBL3O95164 117 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 OR6A2O95222 327 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 RAB36O95755 333 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 MT-ATP6P00846 226 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 SERPINA5P05154 406 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 SRP14P37108 136 aaKnown RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 MTPNP58546 118 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 RBBP4Q09028 425 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 ZP4Q12836 540 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 MELKQ14680 651 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 ZNF74Q16587 644 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 ENTPD8Q5MY95 495 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 GKAP1Q5VSY0 366 aaPredicted RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 LIPNQ5VXI9 398 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 SLC35D2Q76EJ3 337 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 PIWIL3Q7Z3Z3 882 aaKnown RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 SNX32Q86XE0 403 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 C11orf65Q8NCR3 313 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 OR6X1Q8NH79 312 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 CLDND2Q8NHS1 167 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 VANGL1Q8TAA9 524 aaPredicted RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 YIPF5Q969M3 257 aa7.26□□□□□ -1.25
USP28-215ENST00000545608 THOC1Q96FV9 657 aaKnown RBP7.26□□□□□ -1.25
USP28-215ENST00000545608 CGREF1Q99674 301 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms