RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CT62P0C5K7 136 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 PRPS2P11908 318 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 NEFHP12036 1026 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 GGT1P19440 569 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 MDKP21741 143 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 CPT2P23786 658 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 PSMA4P25789 261 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 AGTR1P30556 359 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 GCH1P30793 250 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TIA1P31483 386 aaKnown RBP eCLIP3.36□□□□□ -1.87
USP54-217ENST00000498213 TTKP33981 857 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 MAP3K8P41279 467 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ASMTP46597 345 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 OR3A2P47893 321 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 CARD18P57730 90 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 UBA52P62987 128 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 IRX1P78414 480 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 MRPS11P82912 194 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 GUCY2DQ02846 1103 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 SRYQ05066 204 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 LCP2Q13094 533 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 DDX39BQ13838 428 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 PPA1Q15181 289 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 RAB35Q15286 201 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ZNF239Q16600 458 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 CTU2Q2VPK5 515 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 PGGHGQ32M88 737 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 FAM76BQ5HYJ3 339 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 SH2D4BQ5SQS7 431 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 BEND6Q5SZJ8 279 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 OTUD3Q5T2D3 398 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 C8orf74Q6P047 294 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TFAP2EQ6VUC0 442 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TMEM64Q6YI46 380 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TIFABQ6ZNK6 161 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 DGAT2L6Q6ZPD8 337 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 R3HCC1LQ7Z5L2 792 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 ZNF329Q86UD4 541 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 CTAGE3PQ8IX95 158 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 CENPLQ8N0S6 344 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 ZDHHC22Q8N966 263 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 OR10D3Q8NH80 312 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 FBXO30Q8TB52 745 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 FAM110BQ8TC76 370 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 AENQ8WTP8 325 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 TMEM234Q8WY98 164 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ST8SIA1Q92185 356 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 FIG4Q92562 907 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TRIM63Q969Q1 353 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ZHX1-C8orf76Q96EF9 292 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 MUS81Q96NY9 551 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 MS4A4EQ96PG1 132 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TMEM237Q96Q45 408 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 RBM4BQ9BQ04 359 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 KLHL4Q9C0H6 718 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 OPN3Q9H1Y3 402 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 CDC42EP4Q9H3Q1 356 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 DENND2DQ9H6A0 471 aaPredicted RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 NOL11Q9H8H0 719 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 FOLH1BQ9HBA9 442 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 POLE3Q9NRF9 147 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 SERINC1Q9NRX5 453 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 DDX18Q9NVP1 670 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 CISD1Q9NZ45 108 aaKnown RBP3.36□□□□□ -1.87
USP54-217ENST00000498213 OR6C3Q9NZP0 311 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 KCNG2Q9UJ96 466 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 FBXL2Q9UKC9 423 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 TRAPPC4Q9Y296 219 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 AMDHD2Q9Y303 409 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 HDGFL3Q9Y3E1 203 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 ZNF337Q9Y3M9 751 aa3.36□□□□□ -1.87
USP54-217ENST00000498213 NINQ8N4C6 2090 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 YLPM1P49750 1951 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 GNG14A0A1W2PPG7 69 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 A0A1W2PRB8 838 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 LRP5LA4QPB2 252 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 GLOD5A6NK44 160 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 OR5H1A6NKK0 313 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 C3orf84H3BNL1 204 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 UBXN8O00124 270 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 UPK1AO00322 258 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SAP18O00422 153 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 OR7A17O14581 309 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 PCDH7O60245 1069 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 MGRN1O60291 552 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 CYTIPO60759 359 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 PRKRAO75569 313 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 LYPLA1O75608 230 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 VAMP5O95183 116 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 UTS2O95399 124 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 INHBAP08476 426 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 F7P08709 466 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 LINGO3P0C6S8 592 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 UQCRBP14927 111 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ANPEPP15144 967 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 IMPDH1P20839 514 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 OMGP23515 440 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 GIFP27352 417 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SSTR1P30872 391 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SERPINB5P36952 375 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms