RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ZPLD1Q8TCW7 415 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DOK4Q8TEW6 326 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 RASD2Q96D21 266 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ADAD1Q96M93 576 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 ZNF75AQ96N20 296 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 GPR174Q9BXC1 333 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 WDR13Q9H1Z4 485 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DAPP1Q9UN19 280 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 SCN3AQ9NY46 2000 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 A0A087WV48 116 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 TRBV5-7A0A0A0MS05 114 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 A0A1B0GTI1 187 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 TMEM72A0PK05 275 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 GNB5O14775 395 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 LDB3O75112 727 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 WNT11O96014 354 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 RHOP08100 348 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 CFPP27918 469 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DLSTP36957 453 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 RFC3P40938 356 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DEFB134Q4QY38 66 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 LINC01590Q5TEZ4 76 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 PLPP4Q5VZY2 271 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ZNF595Q8IYB9 648 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ZNF676Q8N7Q3 588 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 OR51D1Q8NGF3 324 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 OR8K3Q8NH51 312 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 GPR148Q8TDV2 347 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 THRSPQ92748 146 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 FGF13Q92913 245 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DVL3Q92997 716 aaPredicted RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 TMEM106AQ96A25 262 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 SLC25A28Q96A46 364 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 SFXN1Q9H9B4 322 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 SLC17A5Q9NRA2 495 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 DNAJB12Q9NXW2 375 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 MRM2Q9UI43 246 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 ZNF230Q9UIE0 474 aaPredicted RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 IMPA2O14732 288 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 RAB3DO95716 219 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ZNF10P21506 573 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 CD34P28906 385 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 BDKRB2P30411 391 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 POU3F4P49335 361 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 MEOX2P50222 304 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 EFNB2P52799 333 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 GPR85P60893 370 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 RUNX2Q13950 521 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 LEG1Q6P5S2 330 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TMEM205Q6UW68 189 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ZNF550Q7Z398 422 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 OR1S2Q8NGQ3 325 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ZNF707Q96C28 371 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 ZNF768Q9H5H4 540 aaKnown RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 ASF1BQ9NVP2 202 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 MBD2Q9UBB5 411 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 DPP7Q9UHL4 492 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 HCFC2Q9Y5Z7 792 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 SLC22A7Q9Y694 548 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TP53BP1Q12888 1972 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 URADA6NGE7 173 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TMEM212A6NML5 194 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 FAM171A2A8MVW0 826 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 SULT1C2O00338 296 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ADAM11O75078 769 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 IGFBP4P22692 258 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 EMDP50402 254 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 PRPS1P60891 318 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TAF13Q15543 124 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 VWA2Q5GFL6 755 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 DHRS7BQ6IAN0 325 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 ZAR1Q86SH2 424 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TMEM229BQ8NBD8 167 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 OR1J4Q8NGS1 313 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 GPX8Q8TED1 209 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ASB12Q8WXK4 309 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 ESRP2Q9H6T0 727 aaKnown RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 TRPV4Q9HBA0 871 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 PHPT1Q9NRX4 125 aaPredicted RBP12.08□□□□□ -0.48
USP40-214ENST00000483519 CTSFQ9UBX1 484 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 EPHA6Q9UF33 1036 aa12.08□□□□□ -0.48
USP40-214ENST00000483519 TICRRQ7Z2Z1 1910 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 TMEM200CA6NKL6 621 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 SLC25A12O75746 678 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 MAP3K8P41279 467 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 PPM1FP49593 454 aaPredicted RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 EXOSC7Q15024 291 aaKnown RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 MANEAQ5SRI9 462 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 KIRREL2Q6UWL6 708 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ZNF511Q8NB15 262 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 MBNL1Q9NR56 388 aaKnown RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 IKZF2Q9UKS7 526 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ERVK-19Q9WJR5 959 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 NOP16Q9Y3C1 178 aaKnown RBP12.07□□□□□ -0.48
USP40-214ENST00000483519 LOC100289279A0A1B0GTE1 492 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 RNF222A6NCQ9 220 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 ABHD16AO95870 558 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 IFNA4P05014 189 aa12.07□□□□□ -0.48
USP40-214ENST00000483519 SLC25A1P53007 311 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms