RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 TMEM54Q969K7 222 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 TAMM41Q96BW9 452 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 THOC1Q96FV9 657 aaKnown RBP12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 BPESC1Q9GZL8 116 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 DYNLRB1Q9NP97 96 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 NANSQ9NR45 359 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 MRGBPQ9NV56 204 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 TAS2R5Q9NYW4 299 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF224Q9NZL3 707 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 ZNF229Q9UJW7 825 aa12.4□□□□□ -0.42
SNRNP40-203ENST00000463988 C11orf98E9PRG8 122 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 PHF1O43189 567 aaPredicted RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 RAB36O95755 333 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 CH25HO95992 272 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 IGFBP1P08833 259 aaPredicted RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 TACSTD2P09758 323 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 ASAH2BP0C7U1 165 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 B4GALT1P15291 398 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 IGFBP5P24593 272 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 GLRXP35754 106 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 RPS23P62266 143 aaKnown RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 RAB1AP62820 205 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 PIGFQ07326 219 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 CYLC2Q14093 348 aaPredicted RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 RBM45Q8IUH3 476 aaKnown RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 OR4D11Q8NGI4 311 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 OR10A6Q8NH74 314 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 SLC26A7Q8TE54 656 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 HPS1Q92902 700 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 ZNF566Q969W8 418 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 MRPL24Q96A35 216 aaKnown RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 SLC25A44Q96H78 314 aaPredicted RBP12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 MS4A3Q96HJ5 214 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 SH3GL1Q99961 368 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 NPHS2Q9NP85 383 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 GLTPQ9NZD2 209 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 SLC7A7Q9UM01 511 aa12.39□□□□□ -0.43
SNRNP40-203ENST00000463988 A0A0G2JND7 137 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 RNF13O43567 381 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 SYNGR3O43761 229 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 SERPINI2O75830 405 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 NPPAP01160 153 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 HIST1H2ABP04908 130 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 SERPINA5P05154 406 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 ADRA2AP08913 450 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 GIPRP48546 466 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 PTDSS1P48651 473 aaKnown RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 CHN2P52757 468 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 FXNQ16595 210 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 NRN1LQ496H8 165 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 COQ5Q5HYK3 327 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 NANOGP8Q6NSW7 305 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 LRFN4Q6PJG9 635 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 UGT2A3Q6UWM9 527 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 HIST3H2AQ7L7L0 130 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 DPPA2Q7Z7J5 298 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 TSPYL5Q86VY4 417 aaPredicted RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 CDK20Q8IZL9 346 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 ZCCHC24Q8N2G6 241 aaKnown RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 VANGL1Q8TAA9 524 aaPredicted RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 UBASH3BQ8TF42 649 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 HIST1H2ACQ93077 130 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 POLR2J2Q9GZM3 115 aaKnown RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 POLR2J3Q9H1A7 115 aaKnown RBP12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 MS4A5Q9H3V2 200 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 NANOGQ9H9S0 305 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 SVEP1Q4LDE5 3571 aa12.38□□□□□ -0.43
SNRNP40-203ENST00000463988 SH3PXD2BA1X283 911 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 CENPBD1B2RD01 187 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 M0R233 179 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 FBP2O00757 339 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 IGF2P01344 180 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 OR8G3PP0DMU2 310 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 SRD5A1P18405 259 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 HNF1AP20823 631 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 LSP1P33241 339 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 CRYBA2P53672 197 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 GALK2Q01415 458 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 RIN1Q13671 783 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 MSMPQ1L6U9 139 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 FAM120AOSQ5T036 256 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 REP15Q6BDI9 236 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 CALHM3Q86XJ0 350 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 SKA3Q8IX90 412 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 PHC2Q8IXK0 858 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 SLC22A24Q8N4F4 322 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 LRRC17Q8N6Y2 441 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 ARIH2OSQ8N7S6 290 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 OR8J3Q8NGG0 315 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 PRSS27Q9BQR3 290 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 REPIN1Q9BWE0 567 aaKnown RBP12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 MRPL37Q9BZE1 423 aaKnown RBP12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 TMEM38BQ9NVV0 291 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 ARGLU1Q9NWB6 273 aaPredicted RBP12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 REV1Q9UBZ9 1251 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 BAG5Q9UL15 447 aa12.37□□□□□ -0.43
SNRNP40-203ENST00000463988 KPNA4O00629 521 aaPredicted RBP12.36□□□□□ -0.43
SNRNP40-203ENST00000463988 DHHO43323 396 aa12.36□□□□□ -0.43
SNRNP40-203ENST00000463988 MGRN1O60291 552 aa12.36□□□□□ -0.43
SNRNP40-203ENST00000463988 LILRA1O75019 489 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms