RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RIF1Q5UIP0 2472 aaKnown RBP10.17□□□□□ -0.78
CUX1-204ENST00000393824 RFPL4AA6NLU0 287 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 RFPL4AL1F8VTS6 287 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 GPR31O00270 319 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 SULT1C2O00338 296 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 PPM1DO15297 605 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 PIAS2O75928 621 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 HTR3BO95264 441 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 CHRM4P08173 479 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 VSIG10L2P0DP72 767 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 ZNF35P13682 527 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 GCGRP47871 477 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 GPR143P51810 404 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 UBE2IP63279 158 aaKnown RBP10.17□□□□□ -0.78
CUX1-204ENST00000393824 TNFRSF17Q02223 184 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 ZNF311Q5JNZ3 666 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 SYT9Q86SS6 491 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 SERPINA12Q8IW75 414 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 OR52B4Q8NGK2 314 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 OR2A1Q8NGT9 310 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 C4orf36Q96KX1 117 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 AMDHD1Q96NU7 426 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 F2RL3Q96RI0 385 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 GINS4Q9BRT9 223 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 COL25A1Q9BXS0 654 aaPredicted RBP10.17□□□□□ -0.78
CUX1-204ENST00000393824 GLIPR2Q9H4G4 154 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 KIR3DX1Q9H7L2 352 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 POLE3Q9NRF9 147 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 TAS2R10Q9NYW0 307 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 IL20RAQ9UHF4 553 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 SLC13A4Q9UKG4 626 aa10.17□□□□□ -0.78
CUX1-204ENST00000393824 ADAMTS9Q9P2N4 1935 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 A0A0D9SG52 128 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 TMEM82A0PJX8 343 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 SLC22A31A6NKX4 558 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 PYCARD-AS1I3L0S3 204 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 SPP1P10451 314 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 NOS3P29474 1203 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 PTH2RP49190 550 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 STARP49675 285 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 RAB28P51157 221 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OC90Q02509 493 aaPredicted RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 C10orf91Q5T1B1 145 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ELP2Q6IA86 826 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZNF613Q6PF04 617 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OLIG3Q7RTU3 272 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 SPAG16Q8N0X2 631 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OR14A16Q8NHC5 309 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 GCDHQ92947 438 aaPredicted RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 PHYHIPLQ96FC7 376 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZC3H10Q96K80 434 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 ENKD1Q9H0I2 346 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 KRCC1Q9NPI7 259 aaPredicted RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZCCHC3Q9NUD5 404 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 ST6GALNAC2Q9UJ37 374 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 AK6Q9Y3D8 172 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 HEATR5BQ9P2D3 2071 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 RP1P56715 2156 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZC3H12DA2A288 527 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 J3QLW9 94 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OGG1O15527 345 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 PRICKLE3O43900 615 aaPredicted RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 NTN1O95631 604 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 S100A8P05109 93 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 CFIP05156 583 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZNF19P17023 458 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 NTSP30990 170 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 MNDAP41218 407 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 GPR4P46093 362 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 KCNJ3P48549 501 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 BLKP51451 505 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OR12D2P58182 307 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 REEP5Q00765 189 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 ZNF85Q03923 595 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 FUT5Q11128 374 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 RPTNQ6XPR3 784 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 DNM1P46Q6ZS02 220 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 MBOAT2Q6ZWT7 520 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 NKAIN4Q8IVV8 208 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 NRMQ8IXM6 262 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 TMEM185AQ8NFB2 350 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OR56A1Q8NGH5 318 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 OR13C5Q8NGS8 318 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 FLVCR1-AS1Q8TAF5 88 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 SLC25A38Q96DW6 304 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 SAMD8Q96LT4 415 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 TEAD3Q99594 435 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 CMSS1Q9BQ75 279 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 LHX9Q9NQ69 397 aa10.16□□□□□ -0.78
CUX1-204ENST00000393824 MYEF2Q9P2K5 600 aaKnown RBP10.16□□□□□ -0.78
CUX1-204ENST00000393824 PCDH15Q96QU1 1955 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 ZNF292O60281 2723 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 FEZF1A0PJY2 475 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 TRAPPC13A5PLN9 417 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 CPSF4LA6NMK7 179 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 H7BY64 318 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 ACOT7O00154 380 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 RTCAO00442 366 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 NDUFS4O43181 175 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 TMPRSS11DO60235 418 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms