RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LMO4	P61968	165 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	MRPS11	P82912	194 aa	Known RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	PIGF	Q07326	219 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	LARS2	Q15031	903 aa	Known RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	GSG1	Q2KHT4	349 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	GKAP1	Q5VSY0	366 aa	Predicted RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	ACSM5	Q6NUN0	579 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF836	Q6ZNA1	936 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	C1orf229	Q6ZS94	237 aa	Predicted RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	LRRC34	Q8IZ02	419 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	CLIP4	Q8N3C7	705 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	PNPT1	Q8TCS8	783 aa	Known RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	YIPF5	Q969M3	257 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	PTDSS2	Q9BVG9	487 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF416	Q9BWM5	594 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	SUCNR1	Q9BXA5	334 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	ARMC7	Q9H6L4	198 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	SLC52A3	Q9NQ40	469 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	CALML5	Q9NZT1	146 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	P2RX2	Q9UBL9	471 aa		10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF443	Q9Y2A4	671 aa	Predicted RBP	10.87	□□□□□ -0.67
SHMT2-223	ENST00000556689	LOC105371242	A0A075B767	164 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	LOC102725191	A0A1B0GVB3	256 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689		M0R3G1	203 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	AKAP8	O43823	692 aa	Known RBP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	OR2T1	O43869	369 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	SEC14L2	O76054	403 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	KRT75	O95678	551 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	AVP	P01185	164 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	VIM	P08670	466 aa	Known RBP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	TROVE2	P10155	538 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	LBP	P18428	481 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	BGN	P21810	368 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	CDKN2C	P42773	168 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	WDR4	P57081	412 aa	Known RBP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	GNGT1	P63211	74 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	GUCY1A3	Q02108	690 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	EGR4	Q05215	589 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	LRRC74A	Q0VAA2	488 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	MAPK11	Q15759	364 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	AWAT1	Q58HT5	328 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	RNF220	Q5VTB9	566 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	LRP11	Q86VZ4	500 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF781	Q8N8C0	355 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	KTI12	Q96EK9	354 aa	Predicted RBP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	MS4A3	Q96HJ5	214 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	TEX37	Q96LM6	180 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	OR2M2	Q96R28	347 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	OR52E6	Q96RD3	313 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	CACYBP	Q9HB71	228 aa	Known RBP	10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	THAP1	Q9NVV9	213 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	FAM53C	Q9NYF3	392 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	B3GAT1	Q9P2W7	334 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	DUSP13	Q9UII6	198 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	POFUT2	Q9Y2G5	429 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	MEGF8	Q7Z7M0	2845 aa		10.86	□□□□□ -0.67
SHMT2-223	ENST00000556689	AIM2	O14862	343 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	BCL10	O95999	233 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF14	P17017	642 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	SLC1A6	P48664	564 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	RPL14	P50914	215 aa	Known RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	CRISP3	P54108	245 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	NME5	P56597	212 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ABCE1	P61221	599 aa	Known RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	UFM1	P61960	85 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	RPS23	P62266	143 aa	Known RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	GALK2	Q01415	458 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	MPP2	Q14168	576 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	MAD2L1BP	Q15013	274 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	PRR31	Q5SQ13	230 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	PHYHD1	Q5SRE7	291 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF813	Q6ZN06	617 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	H1FNT	Q75WM6	255 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	NET1	Q7Z628	596 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	SERPINA11	Q86U17	422 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	C20orf196	Q8IYI0	205 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	TMEM123	Q8N131	208 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	NANP	Q8TBE9	248 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	LRR1	Q96L50	414 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF75A	Q96N20	296 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	SPATA9	Q9BWV2	254 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	DENND2D	Q9H6A0	471 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF385D	Q9H6B1	395 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	CCDC134	Q9H6E4	229 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	G6PC2	Q9NQR9	355 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	SEC14L4	Q9UDX3	406 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	ZNF346	Q9UL40	294 aa	Known RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	FZR1	Q9UM11	496 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	IFT52	Q9Y366	437 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	RAP2C	Q9Y3L5	183 aa		10.85	□□□□□ -0.67
SHMT2-223	ENST00000556689	DSPP	Q9NZW4	1301 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689		A0A0G2JMP0	313 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689		A0A0G2JPF8	293 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689		A0A0X1KG70	313 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689	HNRNPCL2	B2RXH8	293 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689	HNRNPCL3	B7ZW38	293 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689		M0R082	166 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689	RFXANK	O14593	260 aa		10.84	□□□□□ -0.67
SHMT2-223	ENST00000556689	HNRNPCL1	O60812	293 aa	Known RBP	10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms