RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SMU1Q2TAY7 513 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 GLIPR1L2Q4G1C9 344 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 ANXA8L1Q5VT79 327 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 HIST2H2BDQ6DRA6 164 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 ZCCHC23Q6ZST2 131 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 KDM8Q8N371 416 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 VPS37AQ8NEZ2 397 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 KIF18AQ8NI77 898 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 SLC25A28Q96A46 364 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 TIMD4Q96H15 378 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 PTDSS2Q9BVG9 487 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 C1QTNF5Q9BXJ0 243 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 HINT3Q9NQE9 182 aaKnown RBP12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 PLEK2Q9NYT0 353 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 DUSP13Q9UII6 198 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 ZDHHC2Q9UIJ5 367 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 NUP50Q9UKX7 468 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 FZR1Q9UM11 496 aa12.13□□□□□ -0.47
PRPF40A-211ENST00000493468 SLC22A23A1A5C7 686 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 TRAF3IP2O43734 574 aaPredicted RBP12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 CDC14BO60729 498 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 RAB36O95755 333 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 GTF2E2P29084 291 aaKnown RBP12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 LSP1P33241 339 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 CHI3L1P36222 383 aaPredicted RBP12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 RAD52P43351 418 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ANXA11P50995 505 aaKnown RBP12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ATP4BP51164 291 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 SELENOVP59797 346 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 CCL8P80075 99 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 BAMBIQ13145 260 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 TMEM154Q6P9G4 183 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF813Q6ZN06 617 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ANKRD46Q86W74 232 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 PEX5LQ8IYB4 626 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 CADM2Q8N3J6 435 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 SNX33Q8WV41 574 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 RAB1CQ92928 201 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 TUBGCP3Q96CW5 907 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 LRR1Q96L50 414 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ZIM3Q96PE6 472 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 SLC35A5Q9BS91 424 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF224Q9NZL3 707 aa12.12□□□□□ -0.47
PRPF40A-211ENST00000493468 AIM2O14862 343 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 UBL3O95164 117 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 CPSF4O95639 269 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 GKN3PP0CG01 181 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF250P15622 560 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 SERPINB5P36952 375 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 PTDSS1P48651 473 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 KLF3P57682 345 aaPredicted RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 EGR4Q05215 589 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 C1DQ13901 141 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 CASP8Q14790 479 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 DPY19L1Q2PZI1 675 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 LIN52Q52LA3 116 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 ARMCX4Q5H9R4 360 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 PHYHD1Q5SRE7 291 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 RNF220Q5VTB9 566 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 RGS7BPQ6MZT1 257 aaPredicted RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 SNX32Q86XE0 403 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 C20orf196Q8IYI0 205 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 NOA1Q8NC60 698 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 ADPRHL1Q8NDY3 354 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 AGR3Q8TD06 166 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 TESCQ96BS2 214 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 SLC25A36Q96CQ1 311 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 DUX5Q96PT3 197 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 MECRQ9BV79 373 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 RLIMQ9NVW2 624 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 SLCO1C1Q9NYB5 712 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 TAAR3PQ9P1P4 343 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF69Q9UC07 566 aa12.11□□□□□ -0.47
PRPF40A-211ENST00000493468 A0A1B0GUS0 222 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 M0R3G1 203 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 OR2T1O43869 369 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 MDKP21741 143 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 ARRB2P32121 409 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 RPS5P46782 204 aaKnown RBP12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 GIPRP48546 466 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 RAB1AP62820 205 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 PIGFQ07326 219 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 WHAMMP3Q1A5X7 153 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 HFEQ30201 348 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 FAM209AQ5JX71 171 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 C5orf46Q6UWT4 87 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF836Q6ZNA1 936 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 RNF130Q86XS8 419 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 WDFY1Q8IWB7 410 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 DEFB108BQ8NET1 73 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF48Q96MX3 618 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 GAL3ST1Q99999 423 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 TXLNGYQ9BZA5 131 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 MMP27Q9H306 513 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 B3GAT2Q9NPZ5 323 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 MKS1Q9NXB0 559 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 SEC14L4Q9UDX3 406 aa12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 POLR3KQ9Y2Y1 108 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-211ENST00000493468 FOXH1O75593 365 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 SERPINA5P05154 406 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms