RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SHBGP04278 402 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 DBIP07108 87 aaKnown RBP7.03□□□□□ -1.28
USP39-216ENST00000490193 CHRM4P08173 479 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ZNF35P13682 527 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ANPEPP15144 967 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 CREB1P16220 341 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 IL7RP16871 459 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 COL8A2P25067 703 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 GLRXP35754 106 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ACAA2P42765 397 aaKnown RBP7.03□□□□□ -1.28
USP39-216ENST00000490193 MYBPC1Q00872 1141 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 CASP8Q14790 479 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 SYPL1Q16563 259 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 FXNQ16595 210 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 DPY19L1Q2PZI1 675 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 TUSC1Q2TAM9 212 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 C1orf140Q5VVS0 124 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 WBP2NLQ6ICG8 309 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 KRT80Q6KB66 452 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ZNF627Q7L945 461 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 MDP1Q86V88 176 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 IFT20Q8IY31 132 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 C4orf33Q8N1A6 199 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 RIBC1Q8N443 379 aaPredicted RBP7.03□□□□□ -1.28
USP39-216ENST00000490193 ANKFN1Q8N957 763 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ZDHHC22Q8N966 263 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 VPS37AQ8NEZ2 397 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 MFSD8Q8NHS3 518 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 AGR3Q8TD06 166 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 STK35Q8TDR2 534 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 YIPF5Q969M3 257 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 APOPT1Q96IL0 206 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ZNF75AQ96N20 296 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 TMPRSS13Q9BYE2 586 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 LPAR2Q9HBW0 351 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 CRLF2Q9HC73 371 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 GPR35Q9HC97 309 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ESM1Q9NQ30 184 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 SLC52A3Q9NQ40 469 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 ZNF275Q9NSD4 429 aaPredicted RBP7.03□□□□□ -1.28
USP39-216ENST00000490193 TREM2Q9NZC2 230 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 MARCOQ9UEW3 520 aaPredicted RBP7.03□□□□□ -1.28
USP39-216ENST00000490193 ZDHHC2Q9UIJ5 367 aa7.03□□□□□ -1.28
USP39-216ENST00000490193 DSPPQ9NZW4 1301 aa7.02□□□□□ -1.28
USP39-216ENST00000490193 WNK2Q9Y3S1 2297 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 LOC105371242A0A075B767 164 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 LOC102725191A0A1B0GVB3 256 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 ZNF99A8MXY4 864 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 SLC43A1O75387 559 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 RGS9O75916 674 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 CPSF4O95639 269 aaKnown RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 FSHBP01225 129 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 C1QCP02747 245 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 HKR1P10072 659 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 PNMTP11086 282 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 ZNF14P17017 642 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 ZNF43P17038 809 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 CHI3L1P36222 383 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 ANXA11P50995 505 aaKnown RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 CLDN17P56750 224 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 RPS23P62266 143 aaKnown RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 UBA52P62987 128 aaKnown RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 FOXL1Q12952 345 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 NPRL3Q12980 569 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 BNIP2Q12982 314 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 CEACAM16Q2WEN9 425 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 MMEL1Q495T6 779 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 RNF220Q5VTB9 566 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 ACSM5Q6NUN0 579 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 FAHD2BQ6P2I3 314 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 ZCCHC23Q6ZST2 131 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 ANKRD46Q86W74 232 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 TMEM123Q8N131 208 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 GPR137CQ8N3F9 429 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 LRRC17Q8N6Y2 441 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 PIK3C3Q8NEB9 887 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 ZNF837Q96EG3 531 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 FAHD2AQ96GK7 314 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 CCDC115Q96NT0 180 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 SLC35A5Q9BS91 424 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 MECRQ9BV79 373 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 PTDSS2Q9BVG9 487 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 DPY30Q9C005 99 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 DENND2DQ9H6A0 471 aaPredicted RBP7.02□□□□□ -1.29
USP39-216ENST00000490193 NARFLQ9H6Q4 476 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 B3GAT1Q9P2W7 334 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 BTNL2Q9UIR0 455 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 PCDHGB1Q9Y5G3 927 aa7.02□□□□□ -1.29
USP39-216ENST00000490193 A0A0G2JK05 382 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 A0A0G2JMP0 313 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 A0A0X1KG70 313 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 PPIHO43447 177 aaKnown RBP7.01□□□□□ -1.29
USP39-216ENST00000490193 TRAF3IP2O43734 574 aaPredicted RBP7.01□□□□□ -1.29
USP39-216ENST00000490193 AKAP8O43823 692 aaKnown RBP7.01□□□□□ -1.29
USP39-216ENST00000490193 DEAF1O75398 565 aaPredicted RBP7.01□□□□□ -1.29
USP39-216ENST00000490193 NCR1O76036 304 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 AHSA1O95433 338 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 BCL10O95999 233 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 NUDT17P0C025 328 aa7.01□□□□□ -1.29
USP39-216ENST00000490193 GKN3PP0CG01 181 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms