RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 GPR35Q9HC97 309 aa12.84□□□□□ -0.35
RPS28-201ENST00000417088 A4GALTQ9NPC4 353 aa12.84□□□□□ -0.35
RPS28-201ENST00000417088 PCDHB14Q9Y5E9 798 aa12.84□□□□□ -0.35
RPS28-201ENST00000417088 ANK2Q01484 3957 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 IGHV2OR16-5A0A0B4J2B6 119 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 TMEM129A0AVI4 362 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 hCG_2039718K7EN88 272 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 CLIC1O00299 241 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 UBDO15205 165 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 IGFBP1P08833 259 aaPredicted RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 BMP2P12643 396 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 NPR2P20594 1047 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 HNF1AP20823 631 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 GTF2E2P29084 291 aaKnown RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 C1DQ13901 141 aaKnown RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 CEACAM16Q2WEN9 425 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 FAM69AQ5T7M9 428 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 CROCCP2Q86T23 111 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 ZCCHC24Q8N2G6 241 aaKnown RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 GPR137CQ8N3F9 429 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 BBS10Q8TAM1 723 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 NEU4Q8WWR8 484 aaPredicted RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 C12orf10Q9HB07 376 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 CRLF2Q9HC73 371 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 RPS6KB2Q9UBS0 482 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 FBXO9Q9UK97 447 aaPredicted RBP12.83□□□□□ -0.36
RPS28-201ENST00000417088 RAB21Q9UL25 225 aa12.83□□□□□ -0.36
RPS28-201ENST00000417088 IGKV1D-42A0A075B6H8 117 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 LOC102725191A0A1B0GVB3 256 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 A0A1B0GWA3 101 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 LRP5LA4QPB2 252 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 VSTM5A8MXK1 200 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 M0R082 166 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 AIM2O14862 343 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 OR2T1O43869 369 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 DAOP14920 347 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 HOXB9P17482 250 aaPredicted RBP12.82□□□□□ -0.36
RPS28-201ENST00000417088 GIFP27352 417 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 ARR3P36575 388 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 CR1LQ2VPA4 569 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 SLC2A7Q6PXP3 512 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 H1FNTQ75WM6 255 aaPredicted RBP12.82□□□□□ -0.36
RPS28-201ENST00000417088 SPATA21Q7Z572 469 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 MDP1Q86V88 176 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 COMTD1Q86VU5 262 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 TMEM123Q8N131 208 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 MIER2Q8N344 545 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 SVOPLQ8N434 492 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 LSMEM1Q8N8F7 131 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 ZNF417Q8TAU3 575 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 SLC38A4Q969I6 547 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 OR2M2Q96R28 347 aa12.82□□□□□ -0.36
RPS28-201ENST00000417088 ZNF587Q96SQ5 575 aaPredicted RBP12.82□□□□□ -0.36
RPS28-201ENST00000417088 TRAV36DV7A0A075B6V5 113 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 SH3PXD2BA1X283 911 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 TRAF3IP2O43734 574 aaPredicted RBP12.81□□□□□ -0.36
RPS28-201ENST00000417088 LILRA1O75019 489 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 SEC14L2O76054 403 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 TACSTD2P09758 323 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 ETS2P15036 469 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 CBLP22681 906 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 HTR2AP28223 471 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 GRPRP30550 384 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 PRKAR1BP31321 381 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 IL2RGP31785 369 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 NPRL3Q12980 569 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 FADDQ13158 208 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 PHYHD1Q5SRE7 291 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 C5orf46Q6UWT4 87 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 NET1Q7Z628 596 aaPredicted RBP12.81□□□□□ -0.36
RPS28-201ENST00000417088 CCDC36Q8IYA8 594 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 ZNF786Q8N393 782 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 PIK3C3Q8NEB9 887 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 ANKRD27Q96NW4 1050 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 RAD21L1Q9H4I0 556 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 SLC25A37Q9NYZ2 338 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 KLHL14Q9P2G3 628 aa12.81□□□□□ -0.36
RPS28-201ENST00000417088 ZNF99A8MXY4 864 aaPredicted RBP12.8□□□□□ -0.36
RPS28-201ENST00000417088 C5orf58C9J3I9 102 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 MS4A18H0YCH9 400 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 M0R3G1 203 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 AKAP8O43823 692 aaKnown RBP12.8□□□□□ -0.36
RPS28-201ENST00000417088 HPRP00739 348 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 ERCC1P07992 297 aaPredicted RBP12.8□□□□□ -0.36
RPS28-201ENST00000417088 HLA-DOBP13765 273 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 CHN2P52757 468 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 SLC18A1P54219 525 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 IL1RL1Q01638 556 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 SQLEQ14534 574 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 ADRM1Q16186 407 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 MS4A18Q3C1V0 323 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 DHRS4L2Q6PKH6 230 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 MSRB3Q8IXL7 192 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 C20orf196Q8IYI0 205 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 CDK20Q8IZL9 346 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 C10orf111Q8N326 155 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 ADPRHL1Q8NDY3 354 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 IL17RDQ8NFM7 739 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 NFKBIDQ8NI38 313 aa12.8□□□□□ -0.36
RPS28-201ENST00000417088 DNAJA4Q8WW22 397 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms