RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PSPHP78330 225 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ST3GAL4Q11206 333 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SELENBP1Q13228 472 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HEPACAMQ14CZ8 416 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TOMM20Q15388 145 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NDUFAF6Q330K2 333 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SYTL3Q4VX76 610 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LRRC23Q53EV4 343 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PAGE2BQ5JRK9 111 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM255AQ5JRV8 349 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 DCST2Q5T1A1 773 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MRPL2Q5T653 305 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 TTC23Q5W5X9 447 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KRTAP5-3Q6L8H2 238 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 H3F3CQ6NXT2 135 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC30A9Q6PML9 568 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SMARCD3Q6STE5 483 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM205Q6UW68 189 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ENPP7Q6UWV6 458 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TIGD4Q8IY51 512 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LRRC25Q8N386 305 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF786Q8N393 782 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PARP16Q8N5Y8 322 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LRRC17Q8N6Y2 441 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM99Q8N816 258 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SYT14Q8NB59 555 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BPIFB6Q8NFQ5 453 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR4K5Q8NGD3 323 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR10S1Q8NGN2 331 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR52J3Q8NH60 311 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C16orf52Q8NHV5 167 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SMAP2Q8WU79 429 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 IPCEF1Q8WWN9 437 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 OIT3Q8WWZ8 545 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CNOT9Q92600 299 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM162AQ96A26 154 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PPWD1Q96BP3 646 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 MAGED4Q96JG8 741 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 DOCK7Q96N67 2140 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MOGAT1Q96PD6 335 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CDX2Q99626 313 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 MAP3K3Q99759 626 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 H2AFJQ9BTM1 129 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KATNB1Q9BVA0 655 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 POLE3Q9NRF9 147 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 GIMAP4Q9NUV9 329 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CNIH4Q9P003 139 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SPASTQ9UBP0 616 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 WNT16Q9UBV4 365 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C3orf18Q9UK00 162 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CARD8Q9Y2G2 431 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SPTAN1Q13813 2472 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 SEC16AO15027 2179 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FREM1Q5H8C1 2179 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DYNC2H1Q8NCM8 4307 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 YLPM1P49750 1951 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 KIR2DS5A0A0G2JLQ3 304 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 A0A0G2JNG1 304 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 A0A1W2PQD3 144 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DIRC3C9JPN6 131 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LMO7DNF2Z398 122 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 H0YIG0 161 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 J3QRK9 145 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 KIR2DS3K7RE56 304 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SOCS6O14544 535 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SLC31A1O15431 190 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZW10O43264 779 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DNTTP04053 509 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 POLR2CP19387 275 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 MAOAP21397 527 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 HTR1FP30939 366 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 NUDT6P53370 316 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 B3GALT5-AS1P59052 145 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 QRFPP83859 136 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MAT1AQ00266 395 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 MLLT11Q13015 90 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 GNA13Q14344 377 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 KIR2DS5Q14953 304 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 EBPQ15125 230 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 OR1Q1Q15612 314 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CDONQ4KMG0 1287 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MESTQ5EB52 335 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZNF542PQ5EBM4 170 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 AGAP7PQ5VUJ5 663 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 NKAIN2Q5VXU1 208 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 NXNL2Q5VZ03 156 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PMS2CLQ68D20 193 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FAAH2Q6GMR7 532 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 RGS7BPQ6MZT1 257 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 TTC33Q6PID6 262 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 FOXL2NBQ6ZUU3 175 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 Q7L0L9 218 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 GDPD3Q7L5L3 318 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 RNF144BQ7Z419 303 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CLVS1Q8IUQ0 354 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZNF619Q8N2I2 560 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PRSS35Q8N3Z0 413 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FADS6Q8N9I5 356 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PROKR2Q8NFJ6 384 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 OR9A4Q8NGU2 314 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms