RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SLC25A36Q96CQ1 311 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 FOXN4Q96NZ1 517 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 ALKBH3Q96Q83 286 aaPredicted RBP14.07□□□□□ -0.16
CLN3-246ENST00000636228 SLC38A2Q96QD8 506 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 SHARPINQ9H0F6 387 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 CHODLQ9H9P2 273 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 P2RX2Q9UBL9 471 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 ZNF443Q9Y2A4 671 aaPredicted RBP14.07□□□□□ -0.16
CLN3-246ENST00000636228 VWC2LB2RUY7 222 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 FRS3O43559 492 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 SLC22A3O75751 556 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 CSF3P09919 207 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 TFPTP0C1Z6 253 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 SERPINF1P36955 418 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 NR4A2P43354 598 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 PDLIM4P50479 330 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 UBE2NP61088 152 aaKnown RBP14.06□□□□□ -0.16
CLN3-246ENST00000636228 TXNL4AP83876 142 aaKnown RBP14.06□□□□□ -0.16
CLN3-246ENST00000636228 KRTAP24-1Q3LI83 254 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 HHATQ5VTY9 493 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 ANKRD16Q6P6B7 361 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 SERPINA11Q86U17 422 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 MGARPQ8TDB4 240 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 SLC38A5Q8WUX1 472 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 VPS33AQ96AX1 596 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 TMEM19Q96HH6 336 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 PRR14Q9BWN1 585 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 PARD6BQ9BYG5 372 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 TMEM160Q9NX00 188 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 SEC14L4Q9UDX3 406 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 DSPPQ9NZW4 1301 aa14.06□□□□□ -0.16
CLN3-246ENST00000636228 IGHV4-61A0A0C4DH41 118 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 LOC100289279A0A1B0GTE1 492 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 ZNF587BE7ETH6 402 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 HDAC3O15379 428 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 ANP32DO95626 131 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 NUDT7P0C024 238 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 OR4A8P0C604 315 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 IGFBP5P24593 272 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 CALCRP30988 508 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 CRISP3P54108 245 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 WDR4P57081 412 aaKnown RBP14.05□□□□□ -0.16
CLN3-246ENST00000636228 DSTNP60981 165 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 SNRPD2P62316 118 aaKnown RBP14.05□□□□□ -0.16
CLN3-246ENST00000636228 ADIPOQQ15848 244 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 SLC9B1Q4ZJI4 515 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 TNFAIP8L3Q5GJ75 292 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 PRAMEF8Q5VWM4 474 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 PRAMEF7Q5VXH5 474 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 SLC46A3Q7Z3Q1 461 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 ABHD12BQ7Z5M8 362 aaPredicted RBP14.05□□□□□ -0.16
CLN3-246ENST00000636228 KIRREL3Q8IZU9 778 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 MSI2Q96DH6 328 aaKnown RBP14.05□□□□□ -0.16
CLN3-246ENST00000636228 BOD1Q96IK1 185 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 KCNS3Q9BQ31 491 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 PIMREGQ9BSJ6 248 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 TPT1P8Q9HAU6 139 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 CA10Q9NS85 328 aa14.05□□□□□ -0.16
CLN3-246ENST00000636228 NPIPB7O75200 414 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 CRYAAP02489 173 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 IL6P05231 212 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 CELA3BP08861 270 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 CECR9P0C854 216 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 RPS5P46782 204 aaKnown RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 GZMKP49863 264 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 CLDN17P56750 224 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 ROR2Q01974 943 aaKnown RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 NAAAQ02083 359 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 LRRC74AQ0VAA2 488 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 LARS2Q15031 903 aaKnown RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 IQCCQ4KMZ1 466 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 PDCD4Q53EL6 469 aaKnown RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 RNF220Q5VTB9 566 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 MYPOPQ86VE0 399 aaPredicted RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 GLB1L3Q8NCI6 653 aaPredicted RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 OR9I1Q8NGQ6 314 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 KTI12Q96EK9 354 aaPredicted RBP14.04□□□□□ -0.16
CLN3-246ENST00000636228 PTDSS2Q9BVG9 487 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 SPATA9Q9BWV2 254 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 NELFAQ9H3P2 528 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 PIF1Q9H611 641 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 THAP1Q9NVV9 213 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 LPAR3Q9UBY5 353 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 ZNF232Q9UNY5 417 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 RASD1Q9Y272 281 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 FKBP7Q9Y680 259 aa14.04□□□□□ -0.16
CLN3-246ENST00000636228 TRPC5OSA6NMA1 111 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 TMEM229AB2RXF0 380 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 FTCDNL1E5RQL4 147 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 SNNO75324 88 aaPredicted RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 VAMP5O95183 116 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 PNMTP11086 282 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 APEHP13798 732 aaKnown RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 CBLP22681 906 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 ARF1P84077 181 aaKnown RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 HGFACQ04756 655 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 EGR4Q05215 589 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 ZNF311Q5JNZ3 666 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 FAM120AOSQ5T036 256 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 FAM166AQ6J272 317 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms