RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 RREB1Q92766 1687 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 PCCAP05165 728 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-212ENST00000540304 IL6STP40189 918 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-212ENST00000540304 RUFY2Q8WXA3 655 aa11.68□□□□□ -0.54
CLIP1-212ENST00000540304 BCL9LQ86UU0 1499 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 ZBTB38Q8NAP3 1195 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-212ENST00000540304 IL17RAQ96F46 866 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 ACSBG1Q96GR2 724 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 A0A0G2JS52 829 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 VPS72Q15906 364 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 CWC27Q6UX04 472 aaKnown RBP11.67□□□□□ -0.54
CLIP1-212ENST00000540304 NGLY1Q96IV0 654 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 C8orf37Q96NL8 207 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 PLA2G12BQ9BX93 195 aa11.67□□□□□ -0.54
CLIP1-212ENST00000540304 DBNLQ9UJU6 430 aaKnown RBP11.67□□□□□ -0.54
CLIP1-212ENST00000540304 CIZ1Q9ULV3 898 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-212ENST00000540304 RAD50Q92878 1312 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 HIP1O00291 1037 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 HLFQ16534 295 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 ERVV-1B6SEH8 477 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 CIAO1O76071 339 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 ATP5JP18859 108 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 HSPA4P34932 840 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 IL15P40933 162 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-212ENST00000540304 KIAA1211Q6ZU35 1233 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 ATG9AQ7Z3C6 839 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 BOLA2Q9H3K6 86 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 PALD1Q9ULE6 856 aa11.66□□□□□ -0.54
CLIP1-212ENST00000540304 CDHR2Q9BYE9 1310 aa11.65□□□□□ -0.54
CLIP1-212ENST00000540304 MYH3P11055 1940 aa11.65□□□□□ -0.54
CLIP1-212ENST00000540304 NLRP10Q86W26 655 aa11.65□□□□□ -0.54
CLIP1-212ENST00000540304 DZIP3Q86Y13 1208 aaKnown RBP11.65□□□□□ -0.54
CLIP1-212ENST00000540304 LSG1Q9H089 658 aaKnown RBP11.65□□□□□ -0.54
CLIP1-212ENST00000540304 GPR108Q9NPR9 543 aa11.65□□□□□ -0.54
CLIP1-212ENST00000540304 ZNF831Q5JPB2 1677 aa11.65□□□□□ -0.54
CLIP1-212ENST00000540304 LOC102724428A0A0B4J2F2 783 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 EYA2O00167 538 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 ATP6V1AP38606 617 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 SIK1P57059 783 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 FAM98CQ17RN3 349 aaKnown RBP11.65□□□□□ -0.55
CLIP1-212ENST00000540304 FAM89AQ96GI7 184 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 CCDC87Q9NVE4 849 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 TMEM51Q9NW97 253 aa11.65□□□□□ -0.55
CLIP1-212ENST00000540304 PALLDQ8WX93 1383 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 GPTP24298 496 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 CCDC57Q2TAC2 916 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 FNBP4Q8N3X1 1017 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 SMARCC1Q92922 1105 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 SPATA31A6Q5VVP1 1343 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 COL5A3P25940 1745 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 NEK4P51957 841 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 EIF5P55010 431 aaKnown RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 INTS5Q6P9B9 1019 aaKnown RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 DBNDD2Q9BQY9 259 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 FSD1Q9BTV5 496 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 PRDM10Q9NQV6 1147 aa11.64□□□□□ -0.55
CLIP1-212ENST00000540304 ZHX1Q9UKY1 873 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-212ENST00000540304 ZNF609O15014 1411 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 CSF1RP07333 972 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 HSP90B1P14625 803 aaKnown RBP11.63□□□□□ -0.55
CLIP1-212ENST00000540304 CDK11BP21127 795 aaKnown RBP11.63□□□□□ -0.55
CLIP1-212ENST00000540304 CRKLP46109 303 aaKnown RBP11.63□□□□□ -0.55
CLIP1-212ENST00000540304 MCM2P49736 904 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 ZNF594Q96JF6 807 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-212ENST00000540304 TBC1D2BQ9UPU7 963 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 LRRC24Q50LG9 513 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 RFX7Q2KHR2 1363 aa11.63□□□□□ -0.55
CLIP1-212ENST00000540304 MYH14Q7Z406 1995 aaKnown RBP11.62□□□□□ -0.55
CLIP1-212ENST00000540304 ITPK1Q13572 414 aa11.62□□□□□ -0.55
CLIP1-212ENST00000540304 SNRKQ9NRH2 765 aa11.62□□□□□ -0.55
CLIP1-212ENST00000540304 NMIQ13287 307 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-212ENST00000540304 IFIT5Q13325 482 aaKnown RBP11.62□□□□□ -0.55
CLIP1-212ENST00000540304 ZNF34Q8IZ26 560 aa11.62□□□□□ -0.55
CLIP1-212ENST00000540304 HAUS7Q99871 368 aa11.62□□□□□ -0.55
CLIP1-212ENST00000540304 THSD7AQ9UPZ6 1657 aa11.62□□□□□ -0.55
CLIP1-212ENST00000540304 KCNQ2O43526 872 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 FAM227BQ96M60 508 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 NEUROD6Q96NK8 337 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 PUS3Q9BZE2 481 aaKnown RBP11.61□□□□□ -0.55
CLIP1-212ENST00000540304 PDCL3Q9H2J4 239 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 TRMT112Q9UI30 125 aaKnown RBP11.61□□□□□ -0.55
CLIP1-212ENST00000540304 CCDC171Q6TFL3 1326 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 UBN2Q6ZU65 1347 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 CTSWP56202 376 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 RAB3GAP1Q15042 981 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 CEP126Q9P2H0 1117 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 USP21Q9UK80 565 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 SNX14Q9Y5W7 946 aa11.61□□□□□ -0.55
CLIP1-212ENST00000540304 SPEF2Q9C093 1822 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 IRS4O14654 1257 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 NOL8Q76FK4 1167 aaKnown RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 SYNE4Q8N205 404 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 TTLL11Q8NHH1 800 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 BCORQ6W2J9 1755 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 MED23Q9ULK4 1368 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 A0A0D9SFI3 127 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 A0A1B0GUL7 405 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 MCM4P33991 863 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 TIMM10P62072 90 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms