RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 TRIM66O15016 1216 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 ST5P78524 1137 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 ME3Q16798 604 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 SLFNL1Q499Z3 407 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 DDX19AQ9NUU7 478 aaKnown RBP17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 PIK3C2AO00443 1686 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 CLSTN2Q9H4D0 955 aa17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 LRRFIP2Q9Y608 721 aaKnown RBP17.27■□□□□ 0.36
NCKIPSD-204ENST00000416649 GCP02774 474 aa17.27■□□□□ 0.35
NCKIPSD-204ENST00000416649 TMCO3Q6UWJ1 677 aa17.27■□□□□ 0.35
NCKIPSD-204ENST00000416649 RASSF4Q9H2L5 321 aa17.27■□□□□ 0.35
NCKIPSD-204ENST00000416649 DLG5Q8TDM6 1919 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 ADGRL3Q9HAR2 1447 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 SEC31AO94979 1220 aaKnown RBP17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 CCT4P50991 539 aaKnown RBP17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 C11orf57Q6ZUT1 292 aaPredicted RBP17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 HOMER1Q86YM7 354 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 LSG1Q9H089 658 aaKnown RBP17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 STK3Q13188 491 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 CYP46A1Q9Y6A2 500 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 KIAA0232Q92628 1395 aa17.26■□□□□ 0.35
NCKIPSD-204ENST00000416649 CHD2O14647 1828 aaKnown RBP17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 H2AFXP16104 143 aaPredicted RBP17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 RNF20Q5VTR2 975 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 CREBRFQ8IUR6 639 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 CCDC191Q8NCU4 936 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 TMEM94Q12767 1356 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 TPM4P67936 248 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 CCZ1BP86790 482 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 CCZ1P86791 482 aaPredicted RBP17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 UBXN4Q92575 508 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 C19orf44Q9H6X5 657 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 ANKARQ7Z5J8 1434 aa17.25■□□□□ 0.35
NCKIPSD-204ENST00000416649 NEMFO60524 1076 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 GYS2P54840 703 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 SMARCE1Q969G3 411 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 SCAND2PQ9GZW5 306 aaPredicted RBP17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 AXIN2Q9Y2T1 843 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 NPHP3Q7Z494 1330 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 SURF6O75683 361 aaKnown RBP17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 ST3GAL1Q11201 340 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 CHRNA2Q15822 529 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 LEO1Q8WVC0 666 aaPredicted RBP17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 CCDC34Q96HJ3 373 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 FAM193AP78312 1265 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 ERCC4Q92889 916 aaPredicted RBP17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 ARGLU1Q9NWB6 273 aaPredicted RBP17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 STAP2Q9UGK3 403 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 IGSF1Q8N6C5 1336 aa17.24■□□□□ 0.35
NCKIPSD-204ENST00000416649 TXLNBQ8N3L3 684 aa17.23■□□□□ 0.35
NCKIPSD-204ENST00000416649 LCMT1Q9UIC8 334 aa17.23■□□□□ 0.35
NCKIPSD-204ENST00000416649 ANXA1P04083 346 aa17.23■□□□□ 0.35
NCKIPSD-204ENST00000416649 PTH1RQ03431 593 aa17.23■□□□□ 0.35
NCKIPSD-204ENST00000416649 SH2B1Q9NRF2 756 aaPredicted RBP17.23■□□□□ 0.35
NCKIPSD-204ENST00000416649 ATP8B2P98198 1209 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 ZSCAN26Q16670 478 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 CNTROBQ8N137 903 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 MNS1Q8NEH6 495 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 ZSCAN31Q96LW9 406 aaPredicted RBP17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 EPC1Q9H2F5 836 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 TPCN1Q9ULQ1 816 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 FOSBP53539 338 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 LARP1Q6PKG0 1096 aaKnown RBP17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 DDX11Q96FC9 970 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 PGBD1Q96JS3 809 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 LGR6Q9HBX8 967 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 TAOK2Q9UL54 1235 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 FMN2Q9NZ56 1722 aa17.22■□□□□ 0.35
NCKIPSD-204ENST00000416649 MYO1CO00159 1063 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 CHL1O00533 1208 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 CDC25BP30305 580 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 GPS2Q13227 327 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 MPRIPQ6WCQ1 1025 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 IL17REQ8NFR9 667 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.21■□□□□ 0.353e-6■■■□□ 15.2
NCKIPSD-204ENST00000416649 RAB11FIP3O75154 756 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 GNAI3P08754 354 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 OAS2P29728 719 aaKnown RBP17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 VPS53Q5VIR6 699 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 IL17RAQ96F46 866 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 MRFAP1L1Q96HT8 127 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 DNAI1Q9UI46 699 aa17.21■□□□□ 0.35
NCKIPSD-204ENST00000416649 ELP1O95163 1332 aa17.21■□□□□ 0.34
NCKIPSD-204ENST00000416649 GNAT3A8MTJ3 354 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 IQCB1Q15051 598 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 IP6K1Q92551 441 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 STK31Q9BXU1 1019 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 PPFIA3O75145 1194 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 EIF2S2P20042 333 aaKnown RBP17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 GNL2Q13823 731 aaKnown RBP17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 FAM177A1Q8N128 213 aaPredicted RBP17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 KLHL34Q8N239 644 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 NFATC2IPQ8NCF5 419 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 KIF2AO00139 706 aaPredicted RBP17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 PDCP20941 246 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 COL9A3Q14050 684 aaPredicted RBP17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 AOPEPQ8N6M6 819 aa17.2■□□□□ 0.34
NCKIPSD-204ENST00000416649 URI1O94763 535 aaPredicted RBP17.19■□□□□ 0.34
NCKIPSD-204ENST00000416649 LMAN1P49257 510 aa17.19■□□□□ 0.34
NCKIPSD-204ENST00000416649 PPP1R13BQ96KQ4 1090 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms