RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PRAMEF18Q5VWM3 479 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 GABARAPL1Q9H0R8 117 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 PDZD7Q9H5P4 517 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 SGK2Q9HBY8 427 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 ZSWIM8A7E2V4 1837 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 TRBV2A0A0J9YWF9 115 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OPN1MWP04001 364 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OPN1MW2P0DN77 364 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OPN1MW3P0DN78 364 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 SLC7A9P82251 487 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 SLC25A11Q02978 314 aaKnown RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 FAM98CQ17RN3 349 aaKnown RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OR10Q1Q8NGQ4 319 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 NKD1Q969G9 470 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 TBC1D20Q96BZ9 403 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 MS4A7Q9GZW8 240 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 SLC32A1Q9H598 525 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 PATZ1Q9HBE1 687 aaKnown RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 TAF9BQ9HBM6 251 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 COA4Q9NYJ1 87 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 PCOLCE2Q9UKZ9 415 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 A0A1B0GV50 99 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 NFKBIEO00221 500 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 CELF2O95319 508 aaKnown RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 KLF8O95600 359 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 HAPLN1P10915 354 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 SPANXN4Q5MJ08 99 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 CILP2Q8IUL8 1156 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 CYSLTR2Q9NS75 346 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 NCDNQ9UBB6 729 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 TMEM129A0AVI4 362 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 B4DEV8 164 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 MFSD11O43934 449 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 S1PR1P21453 382 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 GRM5P41594 1212 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 THBS3P49746 956 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 CLDN8P56748 225 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 LGALSLQ3ZCW2 172 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF385CQ66K41 422 aaPredicted RBP4.64□□□□□ -1.67
VPS13D-213ENST00000613099 NOTUMQ6P988 496 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OPN5Q6U736 354 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 TMEM135Q86UB9 458 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 HASPINQ8TF76 798 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 NRIP3Q9NQ35 241 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 OR14J1Q9UGF5 321 aa4.64□□□□□ -1.67
VPS13D-213ENST00000613099 PIGAP37287 484 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CEBPDP49716 269 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 DAPP51397 102 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ST3GAL3Q11203 375 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 C10orf120Q5SQS8 335 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CPZQ66K79 652 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 IL20RBQ6UXL0 311 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TP53RKQ96S44 253 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 KCNJ15Q99712 375 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 GABARAPL3Q9BY60 117 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 SLC5A7Q9GZV3 580 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CWH43Q9H720 699 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 KCNIP1Q9NZI2 227 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ATF5Q9Y2D1 282 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF281Q9Y2X9 895 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TRAV18A0A075B6X5 111 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 DCDC2BA2VCK2 349 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TRDCB7Z8K6 153 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TCP10L2B9ZVM9 353 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 H3BQ06 376 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 S1PR4O95977 384 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CYB5R3P00387 301 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ATP1B1P05026 303 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 SLC6A6P31641 620 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 RAB31Q13636 194 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CARD16Q5EG05 197 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 PRAMEF19Q5SWL8 479 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CST9LP1Q5W188 147 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 OR4A47Q6IF82 309 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 FRMPD2BQ6IN97 320 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 RPUSD3Q6P087 351 aaKnown RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TMEM107Q6UX40 140 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 SGPP2Q8IWX5 399 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 OR13C5Q8NGS8 318 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 OR5H2Q8NGV7 314 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 IL31RAQ8NI17 732 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 DNASE1L2Q92874 299 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 MR1Q95460 341 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 C1orf74Q96LT6 269 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CSF3RQ99062 836 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 SLC17A6Q9P2U8 582 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 OR52A1Q9UKL2 312 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 KIAA1324LA8MWY0 1029 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ACKR2O00590 384 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 FBXO24O75426 580 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 OR4F21O95013 312 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 PDGFBP01127 241 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ADH5P11766 374 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 SDHBP21912 280 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 C1QTNF8P60827 252 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CSNK2A1P68400 391 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-213ENST00000613099 ZNF154Q13106 437 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 NKAIN4Q8IVV8 208 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 TMEM145Q8NBT3 493 aa4.63□□□□□ -1.67
VPS13D-213ENST00000613099 CSNK2A3Q8NEV1 391 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms