RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FLRT1Q9NZU1 646 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 CRIM1Q9NZV1 1036 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 TRPC4Q9UBN4 977 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 FTSJ1Q9UET6 329 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 GNG8Q9UK08 70 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 KCND3Q9UK17 655 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 RPH3ALQ9UNE2 315 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 MINPP1Q9UNW1 487 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 CAMK2AQ9UQM7 478 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 SLC27A6Q9Y2P4 619 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 PCYT1BQ9Y5K3 369 aaPredicted RBP5.38□□□□□ -1.55
CD44-225ENST00000527326 FLVCR1Q9Y5Y0 555 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 BRCA1P38398 1863 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 CITO14578 2027 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 IGKV6D-41A0A0C4DH26 115 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TMEM269A0A1B0GVZ9 245 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 RNF222A6NCQ9 220 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ANKRD61A6NGH8 418 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR6C76A6NM76 312 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 GABRR3A8MPY1 467 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ZNF724A8MTY0 619 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 AHRRA9YTQ3 701 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TMEM238C9JI98 176 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 F5H423 210 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 HNRNPDLO14979 420 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 ARPC1BO15143 372 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 MAGEB4O15481 346 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 KDELR3O43731 214 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 PIAS2O75928 621 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 PCDH8O95206 1070 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 FARS2O95363 451 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 ACTL6AO96019 429 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ICAM1P05362 532 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 SERPIND1P05546 499 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 EIF4EP06730 217 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 MMP3P08254 477 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 F7P08709 466 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 SFTA3P0C7M3 94 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TBC1D3HP0C7X1 549 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 EBLN1P0CF75 366 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 AKR1A1P14550 325 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 CD19P15391 556 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TYRP1P17643 537 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 HLA-DPA1P20036 260 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 CCR1P32246 355 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 KDELR2P33947 212 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 GYG1P46976 350 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 LIMS1P48059 325 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TAF6P49848 677 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 LUMP51884 338 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 GTF2A2P52657 109 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 CEBPGP53567 150 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 CRISP1P54107 249 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 NDUFA6P56556 154 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 NKX6-1P78426 367 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 PRR5P85299 388 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 FABP5Q01469 135 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 NAAAQ02083 359 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 EGR3Q06889 387 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TSPAN31Q12999 210 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 VEZF1Q14119 521 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 RBM39Q14498 530 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 CLINT1Q14677 625 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TMEM132DQ14C87 1099 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 PTGES3Q15185 160 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 MOGAT2Q3SYC2 334 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 NKAIN1Q4KMZ8 207 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ACTBL2Q562R1 376 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 C2orf27AQ580R0 203 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ATAT1Q5SQI0 421 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 SLC25A30Q5SVS4 291 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ARMC12Q5T9G4 340 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 HECTD2Q5U5R9 776 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 MRM1Q6IN84 353 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 RGMBQ6NW40 437 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 JMJD6Q6NYC1 403 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 MTFR2Q6P444 385 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 TSSK4Q6SA08 328 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 KLHL24Q6TFL4 600 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 DRAM2Q6UX65 266 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 C6orf15Q6UXA7 325 aaPredicted RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 C16orf59Q7L2K0 433 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 NUP54Q7Z3B4 507 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 THOC6Q86W42 341 aaKnown RBP5.37□□□□□ -1.55
CD44-225ENST00000527326 THNSL2Q86YJ6 484 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 LGI4Q8N135 537 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 HIST3H2BBQ8N257 126 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 BPIFB2Q8N4F0 458 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 ZNF610Q8N9Z0 462 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 Q8NFD4 153 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR10AD1Q8NGE0 317 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR2D3Q8NGH3 330 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR8J1Q8NGP2 316 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR13C8Q8NGS7 320 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR4C6Q8NH72 309 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 THEM6Q8WUY1 208 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 DCAF4Q8WV16 495 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 SLC35F5Q8WV83 523 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 SMIM4Q8WVI0 70 aa5.37□□□□□ -1.55
CD44-225ENST00000527326 OR8D1Q8WZ84 308 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms