RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 LRRC72A6NJI9 287 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 ARPC1BO15143 372 aaKnown RBP9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 CLTBP09497 229 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 TMIGD3P0DMS9 266 aaPredicted RBP9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 BMP7P18075 431 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 RPS27P42677 84 aaKnown RBP9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 RAB28P51157 221 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 TSPAN5P62079 268 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 MLC1Q15049 377 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 GPR139Q6DWJ6 353 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 CMTM4Q8IZR5 234 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR2L5Q8NG80 312 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR2L3Q8NG85 312 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR52L1Q8NGH7 329 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR52I2Q8NH67 350 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 PMEPA1Q969W9 287 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 BPIFA2Q96DR5 249 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 CXorf58Q96LI9 332 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 HS6ST2Q96MM7 605 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 SORCS2Q96PQ0 1159 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 C1QTNF7Q9BXJ2 289 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 C1QTNF2Q9BXJ5 285 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 C20orf85Q9H1P6 137 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 TRPV4Q9HBA0 871 aa9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.58□□□□□ -0.88
CDC42SE1-207ENST00000540998 A0A1B0GTH9 108 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SHOXO15266 292 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 P2RX6O15547 441 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 EPXP11678 715 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 CPMP14384 443 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 AK4P27144 223 aaPredicted RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 MAP2K6P52564 334 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 BLVRAP53004 296 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ERVK-21P61565 698 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 DPTQ07507 201 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ELAVL3Q14576 367 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 IRF4Q15306 451 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 PYHIN1Q6K0P9 492 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SFTPA2Q8IWL1 248 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 TMEM52Q8NDY8 209 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR11G2Q8NGC1 345 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR52E2Q8NGJ4 325 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 LINC00052Q96N35 136 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 RNF208Q9H0X6 261 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 GNG8Q9UK08 70 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ZNF223Q9UK11 482 aaPredicted RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 A0A1W2PP55 124 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 TCRBV16S1A1N1A0A5B0 115 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 LINC00862A6NCI5 91 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 PRR32B1ATL7 298 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 B8ZZF3 427 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SYT5O00445 386 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 NDUFS1P28331 727 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 DRD3P35462 400 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ACSM1Q08AH1 577 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ZIC1Q15915 447 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ALKAL2Q6UX46 152 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 KIAA1324Q6UXG2 1013 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 TMEM64Q6YI46 380 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 RTL4Q6ZR62 310 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 VN1R4Q7Z5H5 301 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 CCL4L1Q8NHW4 92 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SDF2Q99470 211 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 TEX12Q9BXU0 123 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 TSPAN10Q9H1Z9 355 aaPredicted RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 NT5DC2Q9H857 520 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 EMC7Q9NPA0 242 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ANKRD10Q9NXR5 420 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 RDH8Q9NYR8 311 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 DPP7Q9UHL4 492 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 COPS3Q9UNS2 423 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 MEIS3P1A6NDR6 274 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SELENOFO60613 162 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 NFATC1O95644 943 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 HMGN1P05114 100 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 LINC00271P0C7V0 271 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 GDI2P50395 445 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 BTN1A1Q13410 526 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 MFSD13AQ14CX5 517 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SLC39A5Q6ZMH5 540 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ZNF782Q6ZMW2 699 aaPredicted RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ZBTB44Q8NCP5 570 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 OR8K3Q8NH51 312 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 RPLP0P6Q8NHW5 317 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 ACOT12Q8WYK0 555 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 CNOT9Q92600 299 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 OTUB2Q96DC9 234 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 PELI1Q96FA3 418 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 AHCYL2Q96HN2 611 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 LRIG1Q96JA1 1093 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 GFI1Q99684 422 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 KCNK15Q9H427 330 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 STARD5Q9NSY2 213 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 MRPS23Q9Y3D9 190 aaKnown RBP9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 NUBP2Q9Y5Y2 271 aa9.57□□□□□ -0.88
CDC42SE1-207ENST00000540998 SEC16AO15027 2179 aa9.56□□□□□ -0.88
CDC42SE1-207ENST00000540998 PLPP2O43688 288 aa9.56□□□□□ -0.88
CDC42SE1-207ENST00000540998 RPP14O95059 124 aaKnown RBP9.56□□□□□ -0.88
CDC42SE1-207ENST00000540998 SULT1A3P0DMM9 295 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms