RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 EPGNQ6UW88 154 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 DNAJC14Q6Y2X3 702 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-203ENST00000593582 SPNS3Q6ZMD2 512 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 MSANTD1Q6ZTZ1 278 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 HDXQ7Z353 690 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 STK32CQ86UX6 486 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 FAM71CQ8NEG0 241 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 RNF128Q8TEB7 428 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 ROBO4Q8WZ75 1007 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 ZNF524Q96C55 264 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 WFIKKN1Q96NZ8 548 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 SRXN1Q9BYN0 137 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 LIME1Q9H400 295 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 MTHFD2LQ9H903 347 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-203ENST00000593582 FANCFQ9NPI8 374 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-203ENST00000593582 KLHL28Q9NXS3 571 aa13.65□□□□□ -0.22
TRIM28-203ENST00000593582 PRAMEF27A3QJZ7 478 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 POLR3GO15318 223 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-203ENST00000593582 HRGP04196 525 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 NR2F1P10589 423 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 CD1EP15812 388 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 DNASE1P24855 282 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 AGTR1P30556 359 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 RAC3P60763 192 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 STX1BP61266 288 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 MERTKQ12866 999 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 GNA13Q14344 377 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 POU4F3Q15319 338 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 SYPL1Q16563 259 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 TTMPQ5BVD1 217 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 COX20Q5RI15 118 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 TMEM201Q5SNT2 666 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 C6orf10Q5SRN2 563 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 LRRC74BQ6ZQY2 392 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 FCRLAQ7L513 359 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ARFGAP2Q8N6H7 521 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ANKFN1Q8N957 763 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 OR9I1Q8NGQ6 314 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ZNF563Q8TA94 476 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ABHD3Q8WU67 409 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ITCHQ96J02 903 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 KLHL4Q9C0H6 718 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 QRSL1Q9H0R6 528 aaKnown RBP13.64□□□□□ -0.23
TRIM28-203ENST00000593582 GP6Q9HCN6 339 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 SLCO1B3Q9NPD5 702 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 TCF7L2Q9NQB0 619 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 EXOSC3Q9NQT5 275 aaKnown RBP13.64□□□□□ -0.23
TRIM28-203ENST00000593582 ACER3Q9NUN7 267 aa13.64□□□□□ -0.23
TRIM28-203ENST00000593582 MPDZO75970 2070 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 A0A1W2PNR3 127 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 FAM234BA2RU67 622 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 AGAP5A6NIR3 686 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 HMGB1P1B2RPK0 211 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 BCAS1O75363 584 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 PRKD3O94806 890 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CHRM4P08173 479 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 ZCCHC18P0CG32 403 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CCKARP32238 428 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 RYKP34925 604 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 APOBEC1P41238 236 aaKnown RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CRATP43155 626 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 BEND4Q6ZU67 534 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 HMGN2P46Q86SG4 172 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CMIPQ8IY22 773 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 SLC43A2Q8N370 569 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 SLC25A43Q8WUT9 341 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 PMM1Q92871 262 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 VPS33AQ96AX1 596 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 OR5B2Q96R09 309 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 SLC38A1Q9H2H9 487 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 C12orf49Q9H741 205 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 COQ10BQ9H8M1 238 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 VIPAS39Q9H9C1 493 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 TPT1P8Q9HAU6 139 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 SLC6A13Q9NSD5 602 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CCM2LQ9NUG4 571 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 KLHL13Q9P2N7 655 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 P2RX2Q9UBL9 471 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 PLEKHA6Q9Y2H5 1048 aa13.63□□□□□ -0.23
TRIM28-203ENST00000593582 SPIN1Q9Y657 262 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-203ENST00000593582 CLDN24A6NM45 220 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 NID1P14543 1247 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 IL7RP16871 459 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 ENPP1P22413 925 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 IDH3AP50213 366 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 KEAP1Q14145 624 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 SYT14P1Q58G82 188 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 PAMR1Q6UXH9 720 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 PLEKHM3Q6ZWE6 761 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 ZNF550Q7Z398 422 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 GRINAQ7Z429 371 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 FOXC2Q99958 501 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 TACO1Q9BSH4 297 aaKnown RBP13.62□□□□□ -0.23
TRIM28-203ENST00000593582 PLEKHF2Q9H8W4 249 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 INTS9Q9NV88 658 aaKnown RBP13.62□□□□□ -0.23
TRIM28-203ENST00000593582 THUMPD1Q9NXG2 353 aaKnown RBP13.62□□□□□ -0.23
TRIM28-203ENST00000593582 CALML5Q9NZT1 146 aa13.62□□□□□ -0.23
TRIM28-203ENST00000593582 C6orf203Q9P0P8 240 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-203ENST00000593582 KLHL9Q9P2J3 617 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms