RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 SYPL1Q16563 259 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 TMEM201Q5SNT2 666 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 GTF2IRD2BQ6EKJ0 949 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 GTF2IRD2Q86UP8 949 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 ARFGAP2Q8N6H7 521 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 ANKFN1Q8N957 763 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 VPS33AQ96AX1 596 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 QRSL1Q9H0R6 528 aaKnown RBP11.54□□□□□ -0.56
CHMP3-208ENST00000486404 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-208ENST00000486404 ELOVL5Q9NYP7 299 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 KCNE5Q9UJ90 142 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 TESMINQ9Y4I5 508 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 HRNRQ86YZ3 2850 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-208ENST00000486404 SPG11Q96JI7 2443 aa11.54□□□□□ -0.56
CHMP3-208ENST00000486404 NTN1O95631 604 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 CHRM4P08173 479 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 H2AFXP16104 143 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-208ENST00000486404 IL7RP16871 459 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 AGTR1P30556 359 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 PGM1P36871 562 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 MAGEA8P43361 318 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 AQP5P55064 265 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 DSTNP60981 165 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 DAZAP2Q15038 168 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-208ENST00000486404 POU4F3Q15319 338 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 GUSBP1Q15486 140 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 SLC25A53Q5H9E4 307 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 COX20Q5RI15 118 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 LRRC74BQ6ZQY2 392 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 FCRLAQ7L513 359 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 CDC20BQ86Y33 519 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 CMIPQ8IY22 773 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 PEX5LQ8IYB4 626 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 FAM71CQ8NEG0 241 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 RNF128Q8TEB7 428 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 SLC25A43Q8WUT9 341 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-208ENST00000486404 ROBO4Q8WZ75 1007 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 NRGNQ92686 78 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 OR5B2Q96R09 309 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 SRXN1Q9BYN0 137 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 KLHL4Q9C0H6 718 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 SAP130Q9H0E3 1048 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 RAD21L1Q9H4I0 556 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 C12orf49Q9H741 205 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 COQ10BQ9H8M1 238 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 TPT1P8Q9HAU6 139 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 EXOSC3Q9NQT5 275 aaKnown RBP11.53□□□□□ -0.56
CHMP3-208ENST00000486404 KLHL28Q9NXS3 571 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 ZNF226Q9NYT6 803 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 CALML5Q9NZT1 146 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 AKAP6Q13023 2319 aa11.53□□□□□ -0.56
CHMP3-208ENST00000486404 A0A1W2PNR3 127 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 AGAP5A6NIR3 686 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 C16orf97H3BN30 126 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 C1QCP02747 245 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 BCHEP06276 602 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 DBIP07108 87 aaKnown RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ZCCHC18P0CG32 403 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 TFPIP10646 304 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ETFAP13804 333 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 DNAJA1P31689 397 aaKnown RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 CCKARP32238 428 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 UGT2B10P36537 528 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 IDH3AP50213 366 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 CRISP3P54108 245 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 SESN3P58005 492 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 KCNJ10P78508 379 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 FAM27E3Q08E93 113 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 GTDC1Q4AE62 458 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ZNF474Q6S9Z5 364 aaPredicted RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 PLEKHM3Q6ZWE6 761 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ZNF610Q8N9Z0 462 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ABHD3Q8WU67 409 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ZHX1-C8orf76Q96EF9 292 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 AURKBQ96GD4 344 aaPredicted RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 EBF4Q9BQW3 602 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 TACO1Q9BSH4 297 aaKnown RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 CCDC28BQ9BUN5 200 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 SLC38A1Q9H2H9 487 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 SLC6A13Q9NSD5 602 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 ACER3Q9NUN7 267 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 THUMPD1Q9NXG2 353 aaKnown RBP11.52□□□□□ -0.57
CHMP3-208ENST00000486404 KLHL13Q9P2N7 655 aa11.52□□□□□ -0.57
CHMP3-208ENST00000486404 PRAMEF27A3QJZ7 478 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 CLDN24A6NM45 220 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 C5orf58C9J3I9 102 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 ETV2O00321 342 aaPredicted RBP11.51□□□□□ -0.57
CHMP3-208ENST00000486404 EFNA2O43921 213 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 PRKD3O94806 890 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 CGAP01215 116 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 NID1P14543 1247 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 DNASE1P24855 282 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 APOBEC1P41238 236 aaKnown RBP11.51□□□□□ -0.57
CHMP3-208ENST00000486404 PCYT1AP49585 367 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 ART1P52961 327 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 CSNK2A1P68400 391 aaPredicted RBP11.51□□□□□ -0.57
CHMP3-208ENST00000486404 LIN52Q52LA3 116 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 SYT14P1Q58G82 188 aa11.51□□□□□ -0.57
CHMP3-208ENST00000486404 MRPL2Q5T653 305 aaKnown RBP11.51□□□□□ -0.57
CHMP3-208ENST00000486404 SLC2A7Q6PXP3 512 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms