RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	CMIP	Q8IY22	773 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	PEX5L	Q8IYB4	626 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	FAM222B	Q8WU58	562 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	STON2	Q8WXE9	905 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	CNOT9	Q92600	299 aa	Known RBP	21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	REXO5	Q96IC2	774 aa	Known RBP	21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	OPN3	Q9H1Y3	402 aa	Predicted RBP	21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	RAD21L1	Q9H4I0	556 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	RABEP2	Q9H5N1	569 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	EXOSC3	Q9NQT5	275 aa	Known RBP	21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	ACER3	Q9NUN7	267 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	PROCR	Q9UNN8	238 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	TRIM33	Q9UPN9	1127 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146	EMC9	Q9Y3B6	208 aa		21.52	■■□□□ 1.04
CPNE1-223	ENST00000475146		A0A0G2JND7	137 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	ETV2	O00321	342 aa	Predicted RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	DBI	P07108	87 aa	Known RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	RPS4Y1	P22090	263 aa	Known RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	ZNF239	Q16600	458 aa	Known RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	HSP90B2P	Q58FF3	399 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	FAM214B	Q7L5A3	538 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	LINC01560	Q8TB33	94 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	ROBO4	Q8WZ75	1007 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	CPNE4	Q96A23	557 aa	Predicted RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	GMPPA	Q96IJ6	420 aa	Predicted RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	SIKE1	Q9BRV8	207 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	SRXN1	Q9BYN0	137 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	COQ10B	Q9H8M1	238 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	SERINC1	Q9NRX5	453 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	TMEM45A	Q9NWC5	275 aa		21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146	THUMPD1	Q9NXG2	353 aa	Known RBP	21.51	■■□□□ 1.03
CPNE1-223	ENST00000475146		A0A1W2PNR3	127 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	PLAUR	Q03405	335 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	GUSBP1	Q15486	140 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	RGN	Q15493	299 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	MAPK11	Q15759	364 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	MRPL2	Q5T653	305 aa	Known RBP	21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	PLEKHM3	Q6ZWE6	761 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	SLC38A5	Q8WUX1	472 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	PMM1	Q92871	262 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	TMEM19	Q96HH6	336 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	CACYBP	Q9HB71	228 aa	Known RBP	21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	DNAJB12	Q9NXW2	375 aa	Known RBP	21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	FBN2	P35556	2912 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	TEX15	Q9BXT5	2789 aa		21.5	■■□□□ 1.03
CPNE1-223	ENST00000475146	TFPT	P0C1Z6	253 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	PABPC4L	P0CB38	370 aa	Known RBP	21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	NID1	P14543	1247 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	HOXB9	P17482	250 aa	Predicted RBP	21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	PAGE3	Q5JUK9	113 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	LRIF1	Q5T3J3	769 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	GTF2IRD2B	Q6EKJ0	949 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	GTF2IRD2	Q86UP8	949 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	OR52P1P	Q8NH57	321 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	OR5B2	Q96R09	309 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	GLRX2	Q9NS18	164 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	SLC25A37	Q9NYZ2	338 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	SLAMF8	Q9P0V8	285 aa		21.49	■■□□□ 1.03
CPNE1-223	ENST00000475146	AP3D1	O14617	1153 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	SS18L1	O75177	396 aa	Predicted RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	CGA	P01215	116 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	NUDT7	P0C024	238 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	CD8B	P10966	210 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	CD1E	P15812	388 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	KCNJ5	P48544	419 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	IDH2	P48735	452 aa	Known RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	FADD	Q13158	208 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	LIN52	Q52LA3	116 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	ZNF474	Q6S9Z5	364 aa	Predicted RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	GRINA	Q7Z429	371 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	VRK2	Q86Y07	508 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	ZNF610	Q8N9Z0	462 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	OR6K3	Q8NGY3	331 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	RNF128	Q8TEB7	428 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	ABHD3	Q8WU67	409 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	GPATCH1	Q9BRR8	931 aa	Known RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	SLC52A3	Q9NQ40	469 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	CTPS2	Q9NRF8	586 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	SPIN1	Q9Y657	262 aa	Predicted RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	DSPP	Q9NZW4	1301 aa		21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	ANKHD1	Q8IWZ3	2542 aa	Known RBP	21.48	■■□□□ 1.03
CPNE1-223	ENST00000475146	CREBBP	Q92793	2442 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146		A0A1W2PP18	115 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	ADAM11	O75078	769 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	CTAG2	O75638	210 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	TROVE2	P10155	538 aa	Known RBP eCLIP	21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	TFPI	P10646	304 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	EPX	P11678	715 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	POU2F1	P14859	743 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	PPIB	P23284	216 aa	Known RBP	21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	CD79B	P40259	229 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	APOBEC1	P41238	236 aa	Known RBP	21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	FAM27E3	Q08E93	113 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	SYT14P1	Q58G82	188 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	ZNF836	Q6ZNA1	936 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	MSRB3	Q8IXL7	192 aa		21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	SLC25A43	Q8WUT9	341 aa	Predicted RBP	21.47	■■□□□ 1.03
CPNE1-223	ENST00000475146	MAL2	Q969L2	176 aa		21.47	■■□□□ 1.03

Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms