RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 OR5H15A6NDH6 313 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NPIPA5E9PKD4 350 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TNFRSF11BO00300 401 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 AK1P00568 194 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 MAGEA5P43359 124 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ZNF41P51814 821 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 QPRTQ15274 297 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 OR1Q1Q15612 314 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 EXOC3L2Q2M3D2 409 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 EIPR1Q53HC9 387 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ZNF766Q5HY98 468 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 CLEC12AQ5QGZ9 265 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 IZUMO2Q6UXV1 221 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 RANBP3LQ86VV4 465 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 CACTIN-AS1Q8N1I8 211 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 CHDHQ8NE62 594 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 RIMS3Q9UJD0 308 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NPIPA1Q9UND3 350 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 WIF1Q9Y5W5 379 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ABCA4P78363 2273 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 HIVEP3Q5T1R4 2406 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 A0A1B0GWA3 101 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TCRBV3S1A0A5B6 114 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 AQP12BA6NM10 295 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 FFAR1O14842 300 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 CLIC3O95833 236 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 LGI1O95970 557 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 FBXO45P0C2W1 286 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 SAGP10523 405 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 UQCRBP14927 111 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 DPP4P27487 766 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TACR3P29371 465 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 SOX8P57073 446 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 C19orf57Q0VDD7 668 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NPTX1Q15818 432 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 AQP12AQ8IXF9 295 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 PQLC1Q8N2U9 271 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 CBR4Q8N4T8 237 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TP53INP1Q96A56 240 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 DPH1Q9BZG8 443 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TMEM27Q9HBJ8 222 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 IFT52Q9Y366 437 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ZC3H12DA2A288 527 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 ELOA3DA6NLF2 546 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 CLOCKO15516 846 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 MITFO75030 526 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 DEAF1O75398 565 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 CD46P15529 392 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 SLC7A1P30825 629 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 MEOX1P50221 254 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 HLCSP50747 726 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 EEF1A1P68104 462 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 FOXF1Q12946 379 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ZNF791Q3KP31 576 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 ELOA3BQ3SY89 546 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 KLHL26Q53HC5 615 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 OR2T5Q6IEZ7 315 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 HMBOX1Q6NT76 420 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 C16orf87Q6PH81 154 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ASB18Q6ZVZ8 466 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 IGFN1Q86VF2 1251 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 NRMQ8IXM6 262 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 MARVELD2Q8N4S9 558 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ELOA3Q8NG57 546 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 OR2T29Q8NH02 315 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 OR51A7Q8NH64 312 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 PFN4Q8NHR9 129 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 SDCCAG3Q96C92 435 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 DUS3LQ96G46 650 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 ZNF300Q96RE9 604 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 PINK1Q9BXM7 581 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 KLHL4Q9C0H6 718 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 SLC6A15Q9H2J7 730 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 RERGLQ9H628 205 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 BCL2L10Q9HD36 194 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 IL1RAPQ9NPH3 570 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 TIMMDC1Q9NPL8 285 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 SACM1LQ9NTJ5 587 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 CCM2LQ9NUG4 571 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 CNOT11Q9UKZ1 510 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 FREM1Q5H8C1 2179 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 K7ENP7 123 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 M0R129 80 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 EI24O14681 340 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 TFECO14948 347 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 GPIP06744 558 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 IGFBP1P08833 259 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 TBXA2RP21731 343 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 AHCYP23526 432 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 RPS5P46782 204 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 MLLT10P55197 1068 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 CRYZQ08257 329 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 EFR3AQ14156 821 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 NTRK2Q16620 822 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 TBR1Q16650 682 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ST3GAL2Q16842 350 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP4-202ENST00000351842 INO80CQ6PI98 192 aaPredicted RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 LYPD8Q6UX82 237 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 Q6ZPB1 254 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms