RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 LINC01560Q8TB33 94 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 PNPT1Q8TCS8 783 aaKnown RBP11.38□□□□□ -0.59
SHMT2-230ENST00000557427 MAGEE2Q8TD90 523 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-230ENST00000557427 RNASE6Q93091 150 aaKnown RBP11.38□□□□□ -0.59
SHMT2-230ENST00000557427 FBXL20Q96IG2 436 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 ART5Q96L15 291 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 OSBPL10Q9BXB5 764 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 CXorf56Q9H5V9 222 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 IL1RAPQ9NPH3 570 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 TAS2R7Q9NYW3 318 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 EHD3Q9NZN3 535 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 FAF1Q9UNN5 650 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-230ENST00000557427 PCDHGB5Q9Y5G0 923 aa11.38□□□□□ -0.59
SHMT2-230ENST00000557427 FIGNL2A6NMB9 653 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 CLCA1A8K7I4 914 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 H3BNH8 94 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PLOD2O00469 737 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 GNGT2O14610 69 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 BCKDKO14874 412 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PDPK1O15530 556 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 H6PDO95479 791 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 ZNF682O95780 498 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 ALPLP05186 524 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 CT62P0C5K7 136 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 CPMP14384 443 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PORP16435 677 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-230ENST00000557427 SSTR4P31391 388 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PLGLB1Q02325 96 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 FBXL19-AS1Q494R0 122 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 RIPPLY2Q5TAB7 128 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 POMZP3Q6PJE2 187 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 OPN5Q6U736 354 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PRSS57Q6UWY2 283 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 TMEM64Q6YI46 380 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 RTL4Q6ZR62 310 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 USP51Q70EK9 711 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 SLC29A4Q7RTT9 530 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 STK32CQ86UX6 486 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 HIPK1Q86Z02 1210 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 GPALPP1Q8IXQ4 340 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 NAXEQ8NCW5 288 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PSMA8Q8TAA3 256 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 TMEM158Q8WZ71 300 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 RBM4BQ9BQ04 359 aaKnown RBP11.37□□□□□ -0.59
SHMT2-230ENST00000557427 PELOQ9BRX2 385 aaKnown RBP11.37□□□□□ -0.59
SHMT2-230ENST00000557427 RBM4Q9BWF3 364 aaKnown RBP11.37□□□□□ -0.59
SHMT2-230ENST00000557427 FAIM2Q9BWQ8 316 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 GABARAPL1Q9H0R8 117 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 CXorf21Q9HAI6 301 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 ACSS1Q9NUB1 689 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-230ENST00000557427 GPATCH2Q9NW75 528 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 ADPRHL2Q9NX46 363 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 NDUFA13Q9P0J0 144 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 UTS2RQ9UKP6 389 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 CES1P1Q9UKY3 287 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 MYRFQ9Y2G1 1151 aa11.37□□□□□ -0.59
SHMT2-230ENST00000557427 A0A0G2JMM0 328 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 A0A1B0GVC2 190 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 A0A1W2PPB8 328 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 A0A1W2PRS3 328 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 OR14I1A6ND48 311 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 TUBAL3A6NHL2 446 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 KIR3DP1A8MWS1 328 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 IGHG3P01860 377 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 FABP3P05413 133 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 NUDT7P0C024 238 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 ARAFP10398 606 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 THRBP10828 461 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 ETFAP13804 333 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 CNR1P21554 472 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 CHI3L1P36222 383 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 CRATP43155 626 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 SLC37A1P57057 533 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 PPIAP62937 165 aaKnown RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 KCTD21Q4G0X4 260 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 LIN52Q52LA3 116 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 CYBRD1Q53TN4 286 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 C1orf185Q5T7R7 199 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 HLA-DQA1Q5Y7H0 255 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 SAXO2Q658L1 398 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 OR2T5Q6IEZ7 315 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 SHQ1Q6PI26 577 aaKnown RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 PATL1Q86TB9 770 aaKnown RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 GALNT12Q8IXK2 581 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 CLEC4FQ8N1N0 589 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 OR2M7Q8NG81 312 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 OR2T29Q8NH02 315 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 NUBPLQ8TB37 319 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 SLC22A8Q8TCC7 542 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 NEURL3Q96EH8 262 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 NRBF2Q96F24 287 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 ZBED6CLQ96FA7 236 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 HSH2DQ96JZ2 352 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 MYCBPQ99417 103 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 YTHDF1Q9BYJ9 559 aaKnown RBP11.36□□□□□ -0.59
SHMT2-230ENST00000557427 OR10A5Q9H207 317 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 SACM1LQ9NTJ5 587 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 B4GALT7Q9UBV7 327 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 PSME2Q9UL46 239 aa11.36□□□□□ -0.59
SHMT2-230ENST00000557427 C2orf92A0A1B0GVN3 265 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms