RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FANCGO15287 622 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 SNNO75324 88 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 ACTBL2Q562R1 376 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 PIP5KL1Q5T9C9 394 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 SGK3Q96BR1 496 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 BOCQ9BWV1 1114 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 VSX1Q9NZR4 365 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 GAPDHSO14556 408 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 PTGER4P35408 488 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 CPOXP36551 454 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 ZXDBP98169 803 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 CDK5R2Q13319 367 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC10A1Q14973 349 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 SLX4IPQ5VYV7 408 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 LYSMD4Q5XG99 296 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR155Q7Z3F1 870 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 TMEM25Q86YD3 366 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM160A2Q8N612 972 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 OR6F1Q8NGZ6 308 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 MUCL1Q96DR8 90 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 PGAP3Q96FM1 320 aaPredicted RBP12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 CD207Q9UJ71 328 aa12.02□□□□□ -0.48
CCDC88C-204ENST00000389857 CD46P15529 392 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF44P15621 663 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ABOP16442 354 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 SERPINA2P20848 420 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 VIPR2P41587 438 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 P2RY14Q15391 338 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ISCA2Q86U28 154 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 CDS1Q92903 461 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 TCEAL7Q9BRU2 100 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 OR51J1Q9H342 316 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 NUDT7P0C024 238 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 F2RL1P55085 397 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF585AQ6P3V2 769 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 DPPA4Q7L190 304 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 MFSD6LQ8IWD5 586 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 OR52R1Q8NGF1 315 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF286AQ9HBT8 521 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM181Q9P2C4 612 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 CSNK1G3Q9Y6M4 447 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 TSPAN11A1L157 253 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 DPM1O60762 260 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 SEC61A1P61619 476 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC22A6Q4U2R8 563 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 PDLIM3Q53GG5 364 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 FBXW12Q6X9E4 464 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 CBARPQ8N350 705 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZBTB8AQ96BR9 441 aa12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF436Q9C0F3 470 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF142P52746 1687 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-204ENST00000389857 FUOMA2VDF0 154 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 BOLA2-SMG1P6H3BVE0 249 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 RDH16O75452 317 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SNAPINO95295 136 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CBX7O95931 251 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TK1P04183 234 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PRPH2P23942 346 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MC2RQ01718 297 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CEACAM7Q14002 265 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ACSM3Q53FZ2 586 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 OR4M1Q8NGD0 313 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SLAMF9Q96A28 289 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ELP4Q96EB1 424 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 C4orf36Q96KX1 117 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TSSK2Q96PF2 358 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 NKX3-1Q99801 234 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC25A18Q9H1K4 315 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ZDHHC7Q9NXF8 308 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 C5AR2Q9P296 337 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 STEAP1Q9UHE8 339 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MYH7BA7E2Y1 1941 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ARFGEF2Q9Y6D5 1785 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CTSAP10619 480 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 NFYAP23511 347 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 DEFB133Q30KQ1 61 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PAN3Q58A45 887 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 OR52W1Q6IF63 320 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM184AQ6ZMB5 413 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MFFQ9GZY8 342 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 LUZP4Q9P127 313 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 HHLA2Q9UM44 414 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 HIDE1A8MVS5 230 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 NFKBIEO00221 500 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ARPC1BO15143 372 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MITFO75030 526 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 EVI2BP34910 448 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 ERVK-25P63136 954 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 FGFBP1Q14512 234 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CMIPQ8IY22 773 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 SLC15A4Q8N697 577 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM185AQ8NFB2 350 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PAQR8Q8TEZ7 354 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 RBMXL1Q96E39 390 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 UHRF2Q96PU4 802 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 LMAN1LQ9HAT1 526 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 MYOTQ9UBF9 498 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CBLCQ9ULV8 474 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 PLEKHM1Q9Y4G2 1056 aa12.01□□□□□ -0.49
CCDC88C-204ENST00000389857 CITO14578 2027 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms