RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF136P52737 540 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ATXN3P54252 364 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 STARD6P59095 220 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SSTP61278 116 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IL9RQ01113 521 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 GALK2Q01415 458 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SRYQ05066 204 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ACTN3Q08043 901 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 RAB40BQ12829 278 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 PPP1R8Q12972 351 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 BNIP1Q12981 228 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RPA4Q13156 261 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 EXOSC2Q13868 293 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 PDIA5Q14554 519 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KARSQ15046 597 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 PSG5Q15238 335 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TRADDQ15628 312 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CHI3L2Q15782 390 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IGFBP7Q16270 282 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 PKN2Q16513 984 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 SYPL1Q16563 259 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLC5A12Q1EHB4 618 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 PARP6Q2NL67 630 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CCDC57Q2TAC2 916 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SMU1Q2TAY7 513 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ADPRMQ3LIE5 342 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CFAP221Q4G0U5 840 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DNAJC21Q5F1R6 531 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 TMEM255AQ5JRV8 349 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KLF17Q5JT82 389 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 C1orf100Q5SVJ3 147 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TSPO2Q5TGU0 170 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLX4IPQ5VYV7 408 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 FAHD2BQ6P2I3 314 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 PLBD1Q6P4A8 553 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 IYDQ6PHW0 289 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 WDR74Q6RFH5 385 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 ARSKQ6UWY0 536 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 LYPD2Q6UXB3 125 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 WDR88Q6ZMY6 472 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF836Q6ZNA1 936 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 LANCL3Q6ZV70 420 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 P4HA3Q7Z4N8 544 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 LHFPL4Q7Z7J7 247 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 LCA5Q86VQ0 697 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RALGPS2Q86X27 583 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF100Q8IYN0 542 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TMEM61Q8N0U2 210 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CENPSQ8N2Z9 138 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 C6orf223Q8N319 242 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CADM2Q8N3J6 435 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SVOPLQ8N434 492 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CERS5Q8N5B7 392 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TMEM252Q8N6L7 170 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 RNF148Q8N7C7 305 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 C15orf54Q8N8G6 183 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 C15orf56Q8N910 161 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF709Q8N972 641 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF740Q8NDX6 193 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CATSPER1Q8NEC5 780 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR10G2Q8NGC3 310 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR56B1Q8NGI3 324 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR51G2Q8NGK0 314 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR5L2Q8NGL0 311 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR9A1PQ8NGU1 263 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 OR56B4Q8NH76 319 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 EXOC6Q8TAG9 804 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 URGCPQ8TCY9 931 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 AENQ8WTP8 325 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 TRUB1Q8WWH5 349 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 GIMAP1Q8WWP7 306 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLC5A11Q8WWX8 675 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TMEM158Q8WZ71 300 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ESR2Q92731 530 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KRT35Q92764 455 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 MARC2Q969Z3 335 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TMEM186Q96B77 213 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 STARD4Q96DR4 205 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 EEF2KMTQ96G04 330 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 FAHD2AQ96GK7 314 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 VPS39Q96JC1 886 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 FAM210BQ96KR6 192 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF560Q96MR9 790 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ZNF641Q96N77 438 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 CYP2S1Q96SQ9 504 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SLC30A2Q9BRI3 323 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DUSP16Q9BY84 665 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 SRXN1Q9BYN0 137 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 ING2Q9H160 280 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 POLR3FQ9H1D9 316 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 DEFB127Q9H1M4 99 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 C20orf85Q9H1P6 137 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 VCXQ9H320 206 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 TPK1Q9H3S4 243 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 PPDPFQ9H3Y8 114 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 KAT8Q9H7Z6 458 aaKnown RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 COG4Q9H9E3 785 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 CALHM2Q9HA72 323 aa0.19□□□□□ -2.38
VPS35-212ENST00000640313 DMAP1Q9NPF5 467 aaPredicted RBP0.19□□□□□ -2.38
VPS35-212ENST00000640313 FANCFQ9NPI8 374 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms