RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RAPSNQ13702 412 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 MEP1AQ16819 746 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 IQCCQ4KMZ1 466 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF311Q5JNZ3 666 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 FNDC7Q5VTL7 733 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 DHRS4L2Q6PKH6 230 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 IL20RBQ6UXL0 311 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF836Q6ZNA1 936 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 MRGPRGQ86SM5 289 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF227Q86WZ6 799 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 KRT73Q86Y46 540 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 LACC1Q8IV20 430 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 PEX5LQ8IYB4 626 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 BEST3Q8N1M1 668 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF808Q8N4W9 903 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 GOLM1Q8NBJ4 401 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 PAPD5Q8NDF8 572 aaKnown RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 OR10G3Q8NGC4 313 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 OR4D11Q8NGI4 311 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 OR5M3Q8NGP4 307 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SPPL2AQ8TCT8 520 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 GRHL3Q8TE85 626 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SPACA9Q96E40 222 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 TPD52L3Q96J77 140 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 HSH2DQ96JZ2 352 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 C7orf34Q96L11 122 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 DOHHQ9BU89 302 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SPATA5L1Q9BVQ7 753 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 PINK1Q9BXM7 581 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 TRIM15Q9C019 465 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 TRIM45Q9H8W5 580 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 CCM2LQ9NUG4 571 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 RLIMQ9NVW2 624 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SEC14L3Q9UDX4 400 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 RPS6KA6Q9UK32 745 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SAMD4AQ9UPU9 718 aaKnown RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF443Q9Y2A4 671 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 IFT52Q9Y366 437 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 V9GYQ6 96 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 DHRS12A0PJE2 317 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 SERINC4A6NH21 518 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 C17orf51A8MQB3 221 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ALG1L2C9J202 215 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 H3BNX3 289 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 WIPF1O43516 503 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 TPST2O60704 377 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 NID1P14543 1247 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 IL7RP16871 459 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 TNFRSF1BP20333 461 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 SLC7A1P30825 629 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 PRKAR1BP31321 381 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 CD96P40200 585 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ADH7P40394 386 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 PTGDSP41222 190 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 OR1E2P47887 323 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 HLCSP50747 726 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 GAS1P54826 345 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 EFR3AQ14156 821 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 FGFBP1Q14512 234 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 CD226Q15762 336 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 BICRALQ6AI39 1079 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 OPN5Q6U736 354 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 LINC00696Q6ZRV3 163 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 BIVMQ86UB2 503 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 MARCH3Q86UD3 253 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 RBM45Q8IUH3 476 aaKnown RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 TMEM156Q8N614 296 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 POGLUT1Q8NBL1 392 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 SLC26A7Q8TE54 656 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 RASSF5Q8WWW0 418 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 PYDC1Q8WXC3 89 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ASB15Q8WXK1 588 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 CNOT9Q92600 299 aaKnown RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 RELTQ969Z4 430 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 TMCO6Q96DC7 493 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 RNF145Q96MT1 663 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 SEPHS2Q99611 448 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ARHGDIGQ99819 225 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 AMBRA1Q9C0C7 1298 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 CXXC4Q9H2H0 198 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 PROK2Q9HC23 129 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 RYDENQ9NUL5 291 aaKnown RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ADPRHL2Q9NX46 363 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ANKRD10Q9NXR5 420 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 GPR83Q9NYM4 423 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 PLA2G3Q9NZ20 509 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF232Q9UNY5 417 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 DTNAQ9Y4J8 743 aa8.61□□□□□ -1.03
TRIM28-208ENST00000597172 CHCHD2Q9Y6H1 151 aaPredicted RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 SONP18583 2426 aaKnown RBP8.61□□□□□ -1.03
TRIM28-208ENST00000597172 A0A1W2PQD3 144 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 CDHR4A6H8M9 788 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 C2orf72A6NCS6 295 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 B4DXG7 233 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 SYT5O00445 386 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 OIP5O43482 229 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 FRS3O43559 492 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 HS6ST1O60243 411 aa8.6□□□□□ -1.03
TRIM28-208ENST00000597172 ADAM11O75078 769 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms