RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 EXOSC4Q9NPD3 245 aaKnown RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 PRODH2Q9UF12 536 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CYP8B1Q9UNU6 501 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 GRIP1Q9Y3R0 1128 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 CMAHPQ9Y471 501 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 MMACHCQ9Y4U1 282 aa9.14□□□□□ -0.95
SS18-205ENST00000542420 SPIN1Q9Y657 262 aaPredicted RBP9.14□□□□□ -0.95
SS18-205ENST00000542420 IGHV1OR15-9A0A0B4J2B8 117 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 A0A1W2PR77 199 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 NARSO43776 548 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 LDB3O75112 727 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PPM1BO75688 479 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CRYZL1O95825 349 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PVRP15151 417 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 RPS19P39019 145 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 GPR4P46093 362 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 GPR143P51810 404 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ACTC1P68032 377 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ACTA1P68133 377 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 FUT7Q11130 342 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 FLYWCH1Q4VC44 716 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 STEAP3Q658P3 488 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 NIPAL3Q6P499 406 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 OGFOD3Q6PK18 319 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SMARCD3Q6STE5 483 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SLITRK4Q8IW52 837 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 GPALPP1Q8IXQ4 340 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 GDPD1Q8N9F7 314 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 TSTD1Q8NFU3 115 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 OR52R1Q8NGF1 315 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SUN5Q8TC36 379 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 MVB12AQ96EY5 273 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 TXNDC15Q96J42 360 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SLC7A5P2Q9GIP4 190 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 TCEAL2Q9H3H9 227 aaPredicted RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 MARCH7Q9H992 704 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ANKRA2Q9H9E1 313 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 Q9N2J8 555 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 WDR70Q9NW82 654 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ERVK13-1Q9NX77 482 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CHD7Q9P2D1 2997 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 TNFRSF10DQ9UBN6 386 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 KCNE5Q9UJ90 142 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CLCA2Q9UQC9 943 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SIGLEC7Q9Y286 467 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SLC35A3Q9Y2D2 325 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 MRPS17Q9Y2R5 130 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 TLCD2A6NGC4 264 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 METTL12A8MUP2 240 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 HRO43593 1189 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PTP4A3O75365 173 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CD1AP06126 327 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PROS1P07225 676 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CT62P0C5K7 136 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 IFI30P13284 250 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 TBXA2RP21731 343 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PAICSP22234 425 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 PRKACBP22694 351 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SLC6A6P31641 620 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 EMDP50402 254 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ATP12AP54707 1039 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PPP3R1P63098 170 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SNRPNP63162 240 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 PSG6Q00889 435 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 RIN1Q13671 783 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CDONQ4KMG0 1287 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 LIPKQ5VXJ0 399 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ARHGAP11AQ6P4F7 1023 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 CAPSLQ8WWF8 208 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PATE1Q8WXA2 126 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ACOT12Q8WYK0 555 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SAMD8Q96LT4 415 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 GPR174Q9BXC1 333 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 RNF167Q9H6Y7 350 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 MOV10Q9HCE1 1003 aaKnown RBP9.13□□□□□ -0.95
SS18-205ENST00000542420 CTPS2Q9NRF8 586 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PRTFDC1Q9NRG1 225 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 KLHL21Q9UJP4 597 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 SERTAD3Q9UJW9 196 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ICAM5Q9UMF0 924 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 PCDHGB2Q9Y5G2 931 aa9.13□□□□□ -0.95
SS18-205ENST00000542420 ANKRD61A6NGH8 418 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ZNF860A6NHJ4 632 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 SGK494L7N484 410 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 TBX1O43435 398 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 MBTPS2O43462 519 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 PIP5K1CO60331 668 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DNAJB6O75190 326 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 RDH16O75452 317 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ALX3O95076 343 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 IFNGP01579 166 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ZGLP1P0C6A0 271 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ENPP1P22413 925 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 TNFSF8P32971 234 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 RACK1P63244 317 aaKnown RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 LSM11P83369 360 aaKnown RBP eCLIP9.12□□□□□ -0.95
SS18-205ENST00000542420 TDGQ13569 410 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DOC2BQ14184 412 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 SOWAHCQ53LP3 525 aaPredicted RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 PRPF38BQ5VTL8 546 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms