RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ECHS1P30084 290 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 SLC7A1P30825 629 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 FRKP42685 505 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 OR3A2P47893 321 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 P2RX1P51575 399 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 NUDT6P53370 316 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 FOXA1P55317 472 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 RAC3P60763 192 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 POU6F2P78424 691 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 FOXF1Q12946 379 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 DUSP5Q16690 384 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 TMEM176BQ3YBM2 270 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 CFAP157Q5JU67 520 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 TIMM23BQ5SRD1 257 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 C6orf52Q5T4I8 152 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 FRMD7Q6ZUT3 714 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 PHOSPHO1Q8TCT1 267 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 ZFP90Q8TF47 636 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 EGLN2Q96KS0 407 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 MRGPRX4Q96LA9 322 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 STACQ99469 402 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 SRXN1Q9BYN0 137 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 REEP4Q9H6H4 257 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 C1orf109Q9NX04 203 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 DCDC2Q9UHG0 476 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 MGAT4BQ9UQ53 548 aa13.1□□□□□ -0.31
CCDC88B-201ENST00000301897 GOLGA8QA0A0J9YX86 632 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 GOLGA8OA6NCC3 632 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SHISA9B4DS77 424 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 GOLGA8NF8WBI6 632 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 GOLGA8RI6L899 631 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SLC28A1O00337 649 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 PHF1O43189 567 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SSX4O60224 188 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 NEFHP12036 1026 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SHC1P29353 583 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF117Q03924 483 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SELENBP1Q13228 472 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 KIAA0040Q15053 153 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 CD226Q15762 336 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 STK11Q15831 433 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 ARL13AQ5H913 290 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SEZ6L2Q6UXD5 910 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 ZAR1Q86SH2 424 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 OR10H5Q8NGA6 315 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 FBXO27Q8NI29 283 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 FBXO30Q8TB52 745 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 JADE3Q92613 823 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 CIDECQ96AQ7 238 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 MTERF3Q96E29 417 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 TNFRSF13CQ96RJ3 184 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 AMBRA1Q9C0C7 1298 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 SH3BP4Q9P0V3 963 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 GDF2Q9UK05 429 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 TMED5Q9Y3A6 229 aa13.09□□□□□ -0.31
CCDC88B-201ENST00000301897 ZNF814B7Z6K7 855 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 GTPBP1O00178 669 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 NDUFS7O75251 213 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 KRT16P08779 473 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 SLC25A16P16260 332 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 GGT1P19440 569 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 THBS2P35442 1172 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 ASMTP46597 345 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 DNAJB13P59910 316 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 VLDLRP98155 873 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 LOXL1Q08397 574 aaPredicted RBP13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 RASGEF1BQ0VAM2 473 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 PDE7AQ13946 482 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 WHAMMP3Q1A5X7 153 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 TMEM249Q2WGJ8 235 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 EXOSC6Q5RKV6 272 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 TMEM108Q6UXF1 575 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 LRIG3Q6UXM1 1119 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 ZYG11AQ6WRX3 759 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 R3HCC1LQ7Z5L2 792 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 CHMP6Q96FZ7 201 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 BEX2Q9BXY8 128 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 PIGUQ9H490 435 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 COQ10BQ9H8M1 238 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 ICAM5Q9UMF0 924 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 CCL27Q9Y4X3 112 aa13.08□□□□□ -0.32
CCDC88B-201ENST00000301897 YLPM1P49750 1951 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 IGHV4-30-2A0A087WSY4 118 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 FAM234BA2RU67 622 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ELOA3DA6NLF2 546 aaPredicted RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF724A8MTY0 619 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ABCD4O14678 606 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 AKAP10O43572 662 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 EFNA2O43921 213 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 RAMP1O60894 148 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 LYZL6O75951 148 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 URI1O94763 535 aaPredicted RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 NTN1O95631 604 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 C8BP07358 591 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 COX5AP20674 150 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 C21orf58P58505 322 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 MLC1Q15049 377 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 RAB35Q15286 201 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ELOA3BQ3SY89 546 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms