RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 EXOC3L1Q86VI1 746 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 WDR75Q8IWA0 830 aaKnown RBP18.87■□□□□ 0.61
VPS53-216ENST00000574029 GTPBP8Q8N3Z3 284 aaPredicted RBP18.87■□□□□ 0.61
VPS53-216ENST00000574029 GPR151Q8TDV0 419 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 METTL2AQ96IZ6 378 aaKnown RBP18.87■□□□□ 0.61
VPS53-216ENST00000574029 EGLN2Q96KS0 407 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 EQTNQ9NQ60 294 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 RRAGDQ9NQL2 400 aaPredicted RBP18.87■□□□□ 0.61
VPS53-216ENST00000574029 CLEC4AQ9UMR7 237 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 C7orf72A4D263 438 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 CNOT4O95628 575 aaKnown RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 PLGP00747 810 aaPredicted RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 NGFRP08138 427 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 MYL2P10916 166 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 PRPH2P23942 346 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 PSMA4P25789 261 aaKnown RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 CTBP2P56545 445 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 HSPB3Q12988 150 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 SLC29A2Q14542 456 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 PPP4R4Q6NUP7 873 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 ZNF704Q6ZNC4 412 aaPredicted RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 FRMD7Q6ZUT3 714 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 CNPY4Q8N129 248 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 OR4C3Q8NH37 302 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 ZNF764Q96H86 408 aaPredicted RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 NPAS1Q99742 590 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 TNFRSF12AQ9NP84 129 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 GLRX2Q9NS18 164 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 ZNF701Q9NV72 531 aaPredicted RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 NTMQ9P121 344 aa18.86■□□□□ 0.61
VPS53-216ENST00000574029 PSMC3IPQ9P2W1 217 aaPredicted RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 MCTS1Q9ULC4 181 aaKnown RBP18.86■□□□□ 0.61
VPS53-216ENST00000574029 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 UQCRHLA0A096LP55 91 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 NPIPB8E9PQR5 432 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 ADAMDEC1O15204 470 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 PDPK1O15530 556 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 NDUFB5O43674 189 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 TMCC2O75069 709 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 OXSR1O95747 527 aaPredicted RBP18.85■□□□□ 0.61
VPS53-216ENST00000574029 NR1H2P55055 460 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 RAC1P63000 192 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 VPS26BQ4G0F5 336 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 CDRT4Q8N9R6 151 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 CEP70Q8NHQ1 597 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 FAM110BQ8TC76 370 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 ACTRT2Q8TDY3 377 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 SLC9A6Q92581 669 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 ZBTB8AQ96BR9 441 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 GIMAP5Q96F15 307 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 OR10A4Q9H209 315 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 FANCFQ9NPI8 374 aa18.85■□□□□ 0.61
VPS53-216ENST00000574029 KIAA1324LA8MWY0 1029 aaPredicted RBP18.84■□□□□ 0.61
VPS53-216ENST00000574029 CXCL13O43927 109 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 GLRA3O75311 464 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 SEC22BO75396 215 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 CRCPO75575 148 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 PLAUP00749 431 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 PROCP04070 461 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 UROSP10746 265 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 GPC1P35052 558 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 DNAJB13P59910 316 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 ANKRD26P1Q6NSI1 321 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 BEND4Q6ZU67 534 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 ESPNLQ6ZVH7 1005 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 GSPT2Q8IYD1 628 aaKnown RBP18.84■□□□□ 0.61
VPS53-216ENST00000574029 TMEM171Q8WVE6 324 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 CIDECQ96AQ7 238 aaPredicted RBP18.84■□□□□ 0.61
VPS53-216ENST00000574029 TMEM204Q9BSN7 226 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 TBK1Q9UHD2 729 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 DNHD1Q96M86 4753 aa18.84■□□□□ 0.61
VPS53-216ENST00000574029 A0A1W2PPM1 405 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 A0A1W2PRB8 838 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 TBX19O60806 448 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 KCNK2O95069 426 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 SYNGR4O95473 234 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ACP2P11117 423 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 FRKP42685 505 aaPredicted RBP18.83■□□□□ 0.6
VPS53-216ENST00000574029 SLC18A2Q05940 514 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 PLPPR5Q32ZL2 321 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ZNF385BQ569K4 471 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 CPTPQ5TA50 214 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 WDR93Q6P2C0 686 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ZAR1Q86SH2 424 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 GALNT10Q86SR1 603 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ZNF611Q8N823 705 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 NUP43Q8NFH3 380 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 OR2V1Q8NHB1 315 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ZFP28Q8NHY6 868 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 PLPPR2Q96GM1 343 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 FCRL1Q96LA6 429 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 RNF145Q96MT1 663 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 MDFIQ99750 246 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 ACTR6Q9GZN1 396 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 CXorf56Q9H5V9 222 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 MED17Q9NVC6 651 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 GPR52Q9Y2T5 361 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 FBN3Q75N90 2809 aa18.83■□□□□ 0.6
VPS53-216ENST00000574029 A0A0J9YW62 118 aa18.82■□□□□ 0.6
VPS53-216ENST00000574029 INAFM1C9JVW0 142 aa18.82■□□□□ 0.6
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