RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 TNFRSF10AO00220 468 aa8.57□□□□□ -1.04
VPS39-209ENST00000568029 PSME1Q06323 249 aa8.57□□□□□ -1.04
VPS39-209ENST00000568029 MEX3CQ5U5Q3 659 aaKnown RBP8.57□□□□□ -1.04
VPS39-209ENST00000568029 NKTRP30414 1462 aaKnown RBP8.57□□□□□ -1.04
VPS39-209ENST00000568029 ADH1AP07327 375 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 RXRBP28702 533 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 ADD1P35611 737 aaKnown RBP8.56□□□□□ -1.04
VPS39-209ENST00000568029 SCNN1DP51172 638 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 ESCO1Q5FWF5 840 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 TXNDC2Q86VQ3 553 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 SLC26A8Q96RN1 970 aa8.56□□□□□ -1.04
VPS39-209ENST00000568029 AFF2P51816 1311 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 CLSPNQ9HAW4 1339 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.55□□□□□ -1.04
VPS39-209ENST00000568029 TMEM229AB2RXF0 380 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 BACH1O14867 736 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 TIMP2P16035 220 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 WDR4P57081 412 aaKnown RBP8.55□□□□□ -1.04
VPS39-209ENST00000568029 ZNF772Q68DY9 489 aaPredicted RBP8.55□□□□□ -1.04
VPS39-209ENST00000568029 ITPKCQ96DU7 683 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 SLC4A9Q96Q91 983 aa8.55□□□□□ -1.04
VPS39-209ENST00000568029 FGD6Q6ZV73 1430 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 EIF2AK4Q9P2K8 1649 aaKnown RBP8.54□□□□□ -1.04
VPS39-209ENST00000568029 ZIC2O95409 532 aaPredicted RBP8.54□□□□□ -1.04
VPS39-209ENST00000568029 INHAP05111 366 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 GDF10P55107 478 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 KCNA1Q09470 495 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 ZNF358Q9NW07 568 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 PDZRN3Q9UPQ7 1066 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 CHD2O14647 1828 aaKnown RBP8.54□□□□□ -1.04
VPS39-209ENST00000568029 MYO5BQ9ULV0 1848 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 SPATA31A6Q5VVP1 1343 aa8.54□□□□□ -1.04
VPS39-209ENST00000568029 MSH6P52701 1360 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 TMEM2Q9UHN6 1383 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 C1orf216Q8TAB5 229 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 XAGE2Q96GT9 111 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 ETNK1Q9HBU6 452 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 SLAIN2Q9P270 581 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 LRP5O75197 1615 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 NHSL1Q5SYE7 1610 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 EFCAB6Q5THR3 1501 aa8.53□□□□□ -1.04
VPS39-209ENST00000568029 SFI1A8K8P3 1242 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 KCNA6P17658 529 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 SSFA2P28290 1259 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 MEIOBQ8N635 442 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 KDF1Q8NAX2 398 aaPredicted RBP8.52□□□□□ -1.05
VPS39-209ENST00000568029 EHBP1L1Q8N3D4 1523 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 ARHGEF5Q12774 1597 aa8.52□□□□□ -1.05
VPS39-209ENST00000568029 AVPP01185 164 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 PTGIRP43119 386 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 CLN3Q13286 438 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 FAM50AQ14320 339 aaKnown RBP8.51□□□□□ -1.05
VPS39-209ENST00000568029 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS39-209ENST00000568029 HPS1Q92902 700 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 ZFAND3Q9H8U3 227 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 HRH3Q9Y5N1 445 aa8.51□□□□□ -1.05
VPS39-209ENST00000568029 MTUS2Q5JR59 1369 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 ADGRB3O60242 1522 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 ASXL1Q8IXJ9 1541 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 ZBTB7CA1YPR0 619 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 ITGAEP38570 1179 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 EPHA4P54764 986 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 CBLBQ13191 982 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 OCLNQ16625 522 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 Q6ZNB5 142 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 GAS2L2Q8NHY3 880 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 ESYT1Q9BSJ8 1104 aa8.5□□□□□ -1.05
VPS39-209ENST00000568029 WEE1P30291 646 aa8.49□□□□□ -1.05
VPS39-209ENST00000568029 MTFR1Q15390 333 aa8.49□□□□□ -1.05
VPS39-209ENST00000568029 C8orf37Q96NL8 207 aa8.49□□□□□ -1.05
VPS39-209ENST00000568029 TSEN34Q9BSV6 310 aaKnown RBP8.49□□□□□ -1.05
VPS39-209ENST00000568029 GNEQ9Y223 722 aaKnown RBP8.49□□□□□ -1.05
VPS39-209ENST00000568029 GCC2Q8IWJ2 1684 aa8.49□□□□□ -1.05
VPS39-209ENST00000568029 A0A1W2PRU2 124 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 CARNS1A5YM72 827 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 DGAT1O75907 488 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 IL2RAP01589 272 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 IGFBP4P22692 258 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 ATP2B4P23634 1241 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 SMCPP49901 116 aaPredicted RBP8.48□□□□□ -1.05
VPS39-209ENST00000568029 SMTNP53814 917 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 CTC1Q2NKJ3 1217 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 PHLDB3Q6NSJ2 640 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 TSEN2Q8NCE0 465 aaKnown RBP8.48□□□□□ -1.05
VPS39-209ENST00000568029 DDX17Q92841 729 aaKnown RBP8.48□□□□□ -1.05
VPS39-209ENST00000568029 ARHGEF10LQ9HCE6 1279 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 CXXC1Q9P0U4 656 aaPredicted RBP8.48□□□□□ -1.05
VPS39-209ENST00000568029 ATAD2Q6PL18 1390 aa8.48□□□□□ -1.05
VPS39-209ENST00000568029 A6NJY4 79 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 NRG2O14511 850 aaPredicted RBP8.47□□□□□ -1.05
VPS39-209ENST00000568029 CAPN5O15484 640 aaPredicted RBP8.47□□□□□ -1.05
VPS39-209ENST00000568029 GPC1P35052 558 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 FOXK2Q01167 660 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 LAPTM4AQ15012 233 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 TAS1R3Q7RTX0 852 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 STAG2Q8N3U4 1231 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 CNKSR1Q969H4 720 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 HINFPQ9BQA5 517 aa8.47□□□□□ -1.05
VPS39-209ENST00000568029 SCHIP1Q9P0W5 487 aaPredicted RBP8.47□□□□□ -1.05
VPS39-209ENST00000568029 SETD5Q9C0A6 1442 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms