RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 EVI5LQ96CN4 794 aa11.58□□□□□ -0.56
COL6A3-204ENST00000392003 BICC1Q9H694 974 aaKnown RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 TRPM3Q9HCF6 1732 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 COPS6Q7L5N1 327 aa11.58□□□□□ -0.56
COL6A3-204ENST00000392003 ZNF496Q96IT1 587 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 MYD88Q99836 296 aa11.58□□□□□ -0.56
COL6A3-204ENST00000392003 CYP27B1O15528 508 aa11.58□□□□□ -0.56
COL6A3-204ENST00000392003 PTCD1O75127 700 aaKnown RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 MBD3O95983 291 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 IL2RBP14784 551 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 PIP4K2AP48426 406 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-204ENST00000392003 GAS2L3Q86XJ1 694 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 IL17RAQ96F46 866 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 ANKRD13DQ6ZTN6 518 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 LSG1Q9H089 658 aaKnown RBP11.57□□□□□ -0.56
COL6A3-204ENST00000392003 SIL1Q9H173 461 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 SNX14Q9Y5W7 946 aa11.57□□□□□ -0.56
COL6A3-204ENST00000392003 WDR33Q9C0J8 1336 aaKnown RBP11.57□□□□□ -0.56
COL6A3-204ENST00000392003 ZKSCAN1P17029 563 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-204ENST00000392003 NASPP49321 788 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-204ENST00000392003 METTL22Q9BUU2 404 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-204ENST00000392003 TUBGCP6Q96RT7 1819 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 UTYO14607 1347 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 WDR17Q8IZU2 1322 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 BRD1O95696 1058 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 FAM13BQ9NYF5 915 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 ZDHHC9Q9Y397 364 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-204ENST00000392003 CCDC8Q9H0W5 538 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-204ENST00000392003 IL25Q9H293 177 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 LMTK3Q96Q04 1460 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 ERBB4Q15303 1308 aa11.56□□□□□ -0.56
COL6A3-204ENST00000392003 CAMTA1Q9Y6Y1 1673 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 NEURL1BA8MQ27 555 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 GCKRQ14397 625 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 PDIA6Q15084 440 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 LIMCH1Q9UPQ0 1083 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 SOS2Q07890 1332 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-204ENST00000392003 ZNF445P59923 1031 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 IRX3P78415 501 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-204ENST00000392003 SYAP1Q96A49 352 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-204ENST00000392003 PCDH11XQ9BZA7 1347 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 PCDH11YQ9BZA8 1340 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 IGKV5-2P06315 115 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 ZSCAN23Q3MJ62 389 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 FSD1Q9BTV5 496 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 BTG4Q9NY30 223 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 SMC3Q9UQE7 1217 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 USP16Q9Y5T5 823 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 CYP46A1Q9Y6A2 500 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 RGPD5Q99666 1765 aa11.55□□□□□ -0.56
COL6A3-204ENST00000392003 CASTP20810 708 aaKnown RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 SYTL4Q96C24 671 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 CCDC9Q9Y3X0 531 aaKnown RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 KDM6AO15550 1401 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 CCDC173Q0VFZ6 552 aa11.54□□□□□ -0.56
COL6A3-204ENST00000392003 PRPF40BQ6NWY9 871 aaKnown RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 JAKMIP1Q96N16 626 aaKnown RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 SASH1O94885 1247 aa11.54□□□□□ -0.56
COL6A3-204ENST00000392003 DMTNQ08495 405 aa11.54□□□□□ -0.56
COL6A3-204ENST00000392003 EAF2Q96CJ1 260 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-204ENST00000392003 CHMP3Q9Y3E7 222 aa11.54□□□□□ -0.56
COL6A3-204ENST00000392003 PATL2C9JE40 543 aaKnown RBP11.53□□□□□ -0.56
COL6A3-204ENST00000392003 AK2P54819 239 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 RNF20Q5VTR2 975 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 FAM43BQ6ZT52 329 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-204ENST00000392003 ZSCAN31Q96LW9 406 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-204ENST00000392003 CARD10Q9BWT7 1032 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 BOLA2Q9H3K6 86 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 PDRG1Q9NUG6 133 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 CPDO75976 1380 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 ALS2Q96Q42 1657 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 ADAMTS2O95450 1211 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 KAZALD1Q96I82 304 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 TMOD3Q9NYL9 352 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 ATP6V1DQ9Y5K8 247 aa11.53□□□□□ -0.56
COL6A3-204ENST00000392003 MEGF6O75095 1541 aa11.52□□□□□ -0.56
COL6A3-204ENST00000392003 PSMA5P28066 241 aa11.52□□□□□ -0.56
COL6A3-204ENST00000392003 PLEKHG2Q9H7P9 1386 aa11.52□□□□□ -0.56
COL6A3-204ENST00000392003 PIP4K2BP78356 416 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 FOXD4L6Q3SYB3 417 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 FOXD4L3Q6VB84 417 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 UBE3BQ7Z3V4 1068 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 CCDC171Q6TFL3 1326 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 SIPA1L3O60292 1781 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 A0A087WZG4 1122 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 NUTM2BA6NNL0 878 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 NUTM2EB1AL46 878 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 ATP5J2-PTCD1G3V325 749 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 NUTM2AQ8IVF1 878 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-204ENST00000392003 TM6SF1Q9BZW5 370 aa11.52□□□□□ -0.57
COL6A3-204ENST00000392003 PTH1RQ03431 593 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 NMIQ13287 307 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-204ENST00000392003 GPT2Q8TD30 523 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 JARID2Q92833 1246 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-204ENST00000392003 TTC14Q96N46 770 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 SH2B1Q9NRF2 756 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-204ENST00000392003 RBM27Q9P2N5 1060 aaKnown RBP11.51□□□□□ -0.57
COL6A3-204ENST00000392003 RBM8AQ9Y5S9 174 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms