RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MARCH3Q86UD3 253 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 FAM83FQ8NEG4 500 aaPredicted RBP18.87■□□□□ 0.61
CLN3-240ENST00000631023 OR4K17Q8NGC6 315 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 OR5D16Q8NGK9 328 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 MIPOL1Q8TD10 442 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 ITCHQ96J02 903 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 INPP5KQ9BT40 448 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 TP63Q9H3D4 680 aaPredicted RBP18.87■□□□□ 0.61
CLN3-240ENST00000631023 RABEP2Q9H5N1 569 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 TMEM45AQ9NWC5 275 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 MEMO1Q9Y316 297 aa18.87■□□□□ 0.61
CLN3-240ENST00000631023 E9PLN8 166 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 SCDO00767 359 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 ANXA11P50995 505 aaKnown RBP18.86■□□□□ 0.61
CLN3-240ENST00000631023 ATP4BP51164 291 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 GUCY1A3Q02108 690 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 ATAD3BQ5T9A4 648 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 OR4C3Q8NH37 302 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 RFWD2Q8NHY2 731 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 DUSP19Q8WTR2 217 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 PHF12Q96QT6 1004 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 VKORC1Q9BQB6 163 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 OR51I1Q9H343 314 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 PTGES2Q9H7Z7 377 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 FBXO34Q9NWN3 711 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 MRPS18CQ9Y3D5 142 aaKnown RBP18.86■□□□□ 0.61
CLN3-240ENST00000631023 KCNE3Q9Y6H6 103 aa18.86■□□□□ 0.61
CLN3-240ENST00000631023 C15orf38-AP3S2A0A0A6YYH1 394 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 A0A0G2JND7 137 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 ALG1L2C9J202 215 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 NDUFB5O43674 189 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 ANP32DO95626 131 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 OXSR1O95747 527 aaPredicted RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 ANGPTL1O95841 491 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 VIMP08670 466 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 NCF2P19878 526 aaPredicted RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 SRD5A2P31213 254 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 TXNL4AP83876 142 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 STX5Q13190 355 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 SQLEQ14534 574 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 TIGD2Q4W5G0 525 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 YRDCQ86U90 279 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 ZNF527Q8NB42 609 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 OR14L1PQ8NHC6 308 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 CCDC134Q9H6E4 229 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 SPRR3Q9UBC9 169 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 DKKL1Q9UK85 242 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 FBXL2Q9UKC9 423 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 FIGNL2A6NMB9 653 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 KRT75O95678 551 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 ENDOUP21128 410 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 MDH1P40925 334 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 CDKN2CP42773 168 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 ZFP36L2P47974 494 aaKnown RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 KHKP50053 298 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 DSCR4P56555 118 aaPredicted RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 EIPR1Q53HC9 387 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 WIPI1Q5MNZ9 446 aaPredicted RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 C16orf62Q7Z3J2 963 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 ZAR1Q86SH2 424 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 CHDHQ8NE62 594 aaPredicted RBP18.85■□□□□ 0.61
CLN3-240ENST00000631023 OR5M9Q8NGP3 310 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 XAGE5Q8WWM1 108 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 VPS33AQ96AX1 596 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 CCDC120Q96HB5 630 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 SDF2Q99470 211 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 OR2B2Q9GZK3 357 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 DSN1Q9H410 356 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 SERHL2Q9H4I8 314 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 PNPLA3Q9NST1 481 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 TAS2R10Q9NYW0 307 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 CCDC167Q9P0B6 97 aa18.85■□□□□ 0.61
CLN3-240ENST00000631023 FLNBO75369 2602 aaKnown RBP18.84■□□□□ 0.61
CLN3-240ENST00000631023 HEATR5AQ86XA9 2040 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 ZG16O60844 167 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 STX11O75558 287 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 GSNP06396 782 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 ZCCHC18P0CG32 403 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 OR12D1P0DN82 309 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 DPP4P27487 766 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 CASP9P55211 416 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 RCAN2Q14206 197 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 GANABQ14697 944 aaKnown RBP18.84■□□□□ 0.61
CLN3-240ENST00000631023 ARHGAP11BQ3KRB8 267 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 FLYWCH1Q4VC44 716 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 C6orf10Q5SRN2 563 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 METTL21CQ5VZV1 264 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 TMEM211Q6ICI0 200 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 TNFAIP8L2Q6P589 184 aaPredicted RBP18.84■□□□□ 0.61
CLN3-240ENST00000631023 BLOC1S3Q6QNY0 202 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 APOOLQ6UXV4 268 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 RPTNQ6XPR3 784 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 C3P1Q6ZMU1 363 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 IFNEQ86WN2 208 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 MISPQ8IVT2 679 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 FADS6Q8N9I5 356 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 RTN4RQ9BZR6 473 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 FGFR1OP2Q9NVK5 253 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 MED11Q9P086 117 aa18.84■□□□□ 0.61
CLN3-240ENST00000631023 TNFRSF10DQ9UBN6 386 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms