RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TRIM3O75382 744 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 ZIC2O95409 532 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 CERS1P27544 350 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 SLC16A1P53985 500 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 EPHA5P54756 1037 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ARL9Q6T311 187 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 CREB3L2Q70SY1 520 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 C16orf62Q7Z3J2 963 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 TMEM99Q8N816 258 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 DOK4Q8TEW6 326 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 OSTF1Q92882 214 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 FERD3LQ96RJ6 166 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 FAIM2Q9BWQ8 316 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ADAM30Q9UKF2 790 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 RASD1Q9Y272 281 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 NCKAP1Q9Y2A7 1128 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 NUP210Q8TEM1 1887 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 VEGFDO43915 354 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 REM1O75628 298 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 AIFM1O95831 613 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 CISD3P0C7P0 127 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 DRD2P14416 443 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 SLC6A1P30531 599 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 BCL6P41182 706 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 C19orf57Q0VDD7 668 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 MLC1Q15049 377 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 KLHL12Q53G59 568 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 SIGIRRQ6IA17 410 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 DGLUCYQ7Z3D6 616 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 GRAMD2AQ8IUY3 354 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 GPR135Q8IZ08 494 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 C9orf62Q8N4C0 152 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 ACOT4Q8N9L9 421 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 PCNPQ8WW12 178 aaKnown RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 CREB3L1Q96BA8 519 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 CHFRQ96EP1 664 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 CAMK1GQ96NX5 476 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 NOTCH4Q99466 2003 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 MCHR1Q99705 422 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 HCAR1Q9BXC0 346 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 MKRN2Q9H000 416 aaKnown RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 ENKD1Q9H0I2 346 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 PAK6Q9NQU5 681 aaPredicted RBP12.34□□□□□ -0.43
CLN3-210ENST00000563874 KLHL1Q9NR64 748 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 IL20Q9NYY1 176 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 MAFFQ9ULX9 164 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 POLHQ9Y253 713 aa12.34□□□□□ -0.43
CLN3-210ENST00000563874 KIAA1549LQ6ZVL6 1849 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 E9PI62 339 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 CHP2O43745 196 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 IGHA1P01876 353 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 MRPL3P09001 348 aaKnown RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 SLC35G4P0C7Q5 338 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ERGP11308 486 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 PAICSP22234 425 aaKnown RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 HTR1FP30939 366 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 TALDO1P37837 337 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 PDX1P52945 283 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ATP12AP54707 1039 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ERVFC1P60507 584 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ARHGAP15Q53QZ3 475 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 C6orf132Q5T0Z8 1188 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 PLPP4Q5VZY2 271 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ZNF620Q6ZNG0 422 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 CXXC5Q7LFL8 322 aaKnown RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 GDF7Q7Z4P5 450 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 LRRTM4Q86VH4 590 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 NUP43Q8NFH3 380 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 COL26A1Q96A83 441 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 RFT1Q96AA3 541 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ABHD1Q96SE0 405 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 MED28Q9H204 178 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 STMN3Q9NZ72 180 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ENTPD4Q9Y227 616 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 OR1A2Q9Y585 309 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 SLC19A2O60779 497 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 RGS9O75916 674 aaPredicted RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 SLC3A1Q07837 685 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 TCEA2Q15560 299 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 FCRLBQ6BAA4 426 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 MTFR2Q6P444 385 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 OR2T33Q8NG76 320 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 OR10H4Q8NGA5 316 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ACOT11Q8WXI4 607 aaPredicted RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 SLC41A3Q96GZ6 507 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 MAP6Q96JE9 813 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 C12orf66Q96MD2 445 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 COQ7Q99807 217 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 ALG8Q9BVK2 526 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 TTTY10Q9BZA0 68 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 SYNPO2LQ9H987 977 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 SLC7A7Q9UM01 511 aa12.33□□□□□ -0.44
CLN3-210ENST00000563874 MRPS7Q9Y2R9 242 aaKnown RBP12.33□□□□□ -0.44
CLN3-210ENST00000563874 SCN3AQ9NY46 2000 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 A0A1W2PPK0 400 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 HYAL3O43820 417 aaPredicted RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 ACRP10323 421 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ADH5P11766 374 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 HIST1H1TP22492 207 aaPredicted RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 FPR3P25089 353 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms