RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ACTL6AO96019 429 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 HOXD4P09016 255 aaPredicted RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 NPIPA8P0DM63 369 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 COX6B1P14854 86 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 GABRA1P14867 456 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 ZNF708P17019 499 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 PRPS1L1P21108 318 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 PSMA4P25789 261 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 DPP4P27487 766 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 GPC1P35052 558 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 PTGER4P35408 488 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 TIMP3P35625 211 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 RNF144AP50876 292 aaPredicted RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 AGFG1P52594 562 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 SUCLG1P53597 346 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 RPS26P62854 115 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 PRR5P85299 388 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 OCRLQ01968 901 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 STX5Q13190 355 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 STX3Q13277 289 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 LASP1Q14847 261 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 TOMM20Q15388 145 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CD226Q15762 336 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 DECR1Q16698 335 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.64□□□□□ -0.87
CD44-227ENST00000528086 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.64□□□□□ -0.87
CD44-227ENST00000528086 CPTPQ5TA50 214 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 OR4F3Q6IEY1 312 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 ARSKQ6UWY0 536 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 MEX3BQ6ZN04 569 aaKnown RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 EID3Q8N140 333 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CDRT4Q8N9R6 151 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 OR10Q1Q8NGQ4 319 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 ZPLD1Q8TCW7 415 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 GPR151Q8TDV0 419 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 OR5P2Q8WZ92 322 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 SLC9A6Q92581 669 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 CDS1Q92903 461 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 C1GALT1C1Q96EU7 318 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 UCN2Q96RP3 112 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 KCNE5Q9UJ90 142 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 RPH3AQ9Y2J0 694 aaPredicted RBP9.64□□□□□ -0.87
CD44-227ENST00000528086 L3MBTL1Q9Y468 752 aa9.64□□□□□ -0.87
CD44-227ENST00000528086 FREM1Q5H8C1 2179 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 OR2M5A3KFT3 312 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 CLCA1A8K7I4 914 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ALG1L2C9J202 215 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 HCRTR2O43614 444 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 EFNA2O43921 213 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ANGPTL1O95841 491 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 TUBBP07437 444 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 NGFRP08138 427 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 MYZAPP0CAP1 466 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 TBXA2RP21731 343 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 HPCAL1P37235 193 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 RFX3P48380 749 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 CCT3P49368 545 aaKnown RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 SLC18A1P54219 525 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 CLDN20P56880 219 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 PSPHP78330 225 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 PLAURQ03405 335 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 FUT5Q11128 374 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 CASP8Q14790 479 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 SMU1Q2TAY7 513 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 OGFOD2Q6N063 350 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 R3HCC1LQ7Z5L2 792 aaKnown RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 LACC1Q8IV20 430 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 WDR75Q8IWA0 830 aaKnown RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 GATSQ8NAP1 163 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 OR5AK3PQ8NH89 298 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 OR14L1PQ8NHC6 308 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 CEP70Q8NHQ1 597 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ZFP28Q8NHY6 868 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 POC1BQ8TC44 478 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 MGARPQ8TDB4 240 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ARSGQ96EG1 525 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 LURAP1Q96LR2 239 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 DUSP26Q9BV47 211 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 BHLHE41Q9C0J9 482 aaPredicted RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 PIGUQ9H490 435 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 WDR55Q9H6Y2 383 aaPredicted RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 CALHM2Q9HA72 323 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 KCNJ16Q9NPI9 418 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ZCCHC3Q9NUD5 404 aaKnown RBP9.63□□□□□ -0.87
CD44-227ENST00000528086 JKAMPQ9P055 326 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 ZNF337Q9Y3M9 751 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 GPR45Q9Y5Y3 372 aa9.63□□□□□ -0.87
CD44-227ENST00000528086 TEP1Q99973 2627 aaKnown RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 TTC36A6NLP5 189 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 SYT5O00445 386 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 BCAS1O75363 584 aaPredicted RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 CD1EP15812 388 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 HK1P19367 917 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 IL11P20809 199 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 CHMP24386 653 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 MAPK1P28482 360 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 KRT20P35900 424 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 CASP9P55211 416 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 DSCR4P56555 118 aaPredicted RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 UFM1P61960 85 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms