RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SEC61A2Q9H9S3 476 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 UCK1Q9HA47 277 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 PREBQ9HCU5 417 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 TM9SF3Q9HD45 589 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 C8orf4Q9NR00 106 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 FBXO8Q9NRD0 319 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 PNPLA3Q9NST1 481 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ACSS1Q9NUB1 689 aaPredicted RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 DDX18Q9NVP1 670 aaKnown RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 ARL15Q9NXU5 204 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 IFT80Q9P2H3 777 aaPredicted RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 ZNF69Q9UC07 566 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ENPP5Q9UJA9 477 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 LSM7Q9UK45 103 aaKnown RBP2.14□□□□□ -2.07
VPS54-202ENST00000354504 SLC8A2Q9UPR5 921 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ENTPD4Q9Y227 616 aa2.14□□□□□ -2.07
VPS54-202ENST00000354504 ZNF318Q5VUA4 2279 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ASXL3Q9C0F0 2248 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 IGKV1D-42A0A075B6H8 117 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A087WV48 116 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A087WWL8 130 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 IGHV1OR15-9A0A0B4J2B8 117 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A0G2JK05 382 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SMIM31A0A1B0GVY4 71 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TYW5A2RUC4 315 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 VWC2LB2RUY7 222 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SAP18O00422 153 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF197O14709 1029 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CFLARO15519 480 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF354AO60765 605 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 CNOT3O75175 753 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 PTP4A3O75365 173 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 LRATO95237 230 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NFATC1O95644 943 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 AIFM1O95831 613 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ATP1B1P05026 303 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CHRM5P08912 532 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 GGT2P36268 569 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TSFMP43897 325 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 RPS4XP62701 263 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 POLR2LP62875 67 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 PSG6Q00889 435 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PLOD1Q02809 727 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 FOXL1Q12952 345 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RAB30Q15771 203 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MICAQ29983 383 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TMEM44Q2T9K0 475 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ITPRIPL2Q3MIP1 535 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TOR1AIP1Q5JTV8 583 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 C1orf94Q6P1W5 598 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 IYDQ6PHW0 289 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 DNM1P46Q6ZS02 220 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 DOK3Q7L591 496 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PEX5LQ8IYB4 626 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CFAP206Q8IYR0 622 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SVOPLQ8N434 492 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RYBPQ8N488 228 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 DENND6BQ8NEG7 585 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 FAM46DQ8NEK8 389 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 OR5K1Q8NHB7 308 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SLC7A13Q8TCU3 470 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TM9SF4Q92544 642 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 GGHQ92820 318 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MCUR1Q96AQ8 359 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NMD3Q96D46 503 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 DGCR14Q96DF8 476 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SENP5Q96HI0 755 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 APOLD1Q96LR9 279 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TSSK3Q96PN8 268 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MAPKAP1Q9BPZ7 522 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 DOHHQ9BU89 302 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 DUSP26Q9BV47 211 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CDCA4Q9BXL8 241 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SLC17A9Q9BYT1 436 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RAB33BQ9H082 229 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 OR10A2Q9H208 303 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF768Q9H5H4 540 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 HHATLQ9HCP6 504 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ACOT13Q9NPJ3 140 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MEPEQ9NQ76 525 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SLC22A11Q9NSA0 550 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EXD2Q9NVH0 621 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZSCAN32Q9NX65 697 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EHD3Q9NZN3 535 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SELENONQ9NZV5 590 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CRLS1Q9UJA2 301 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ANAPC2Q9UJX6 822 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 HSPE1-MOB4S4R3N1 261 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CSMD3Q7Z407 3707 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 DNAH1Q9P2D7 4330 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NCOR1O75376 2440 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A0B4J293 547 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SPTY2D1-AS1A0A0U1RR47 76 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PNU3 283 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SH3PXD2BA1X283 911 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SAC3D1A6NKF1 404 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 BHLHE40O14503 412 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 FPGTO14772 594 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms