RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NGBQ9NPG2 151 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 ZDHHC18Q9NUE0 388 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 DDX18Q9NVP1 670 aaKnown RBP13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 SIRT5Q9NXA8 310 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 PYCARDQ9ULZ3 195 aa13.24□□□□□ -0.29
CCDC88B-201ENST00000301897 MYO1GB0I1T2 1018 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 EIF1AYO14602 144 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 TLX2O43763 284 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 ENO1P06733 434 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 FESP07332 822 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 ANXA4P09525 319 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 IFI6P09912 130 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 TSPAN8P19075 237 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 NCBP2P52298 156 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 PRR5P85299 388 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF763Q0D2J5 394 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 VEZF1Q14119 521 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 CLEC12BQ2HXU8 276 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 LGSNQ5TDP6 509 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 GPRIN3Q6ZVF9 776 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 MARCH3Q86UD3 253 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 GGNQ86UU5 652 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 WFDC8Q8IUA0 241 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 RELL1Q8IUW5 271 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 OR2L13Q8N349 312 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 STEAP2Q8NFT2 490 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 OR5M1Q8NGP8 315 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 AKAP1Q92667 903 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 USB1Q9BQ65 265 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 FUT8Q9BYC5 575 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 MIEF1Q9NQG6 463 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 TAS2R7Q9NYW3 318 aa13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 WBP11Q9Y2W2 641 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-201ENST00000301897 C7orf72A4D263 438 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 SUPT7LO94864 414 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 KCNH1O95259 989 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 UTS2O95399 124 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 PSMG1O95456 288 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 ANGPTL1O95841 491 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 JUNP05412 331 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 TUBBP07437 444 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 PABPC4LP0CB38 370 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 CTAGE8P0CG41 777 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 ME2P23368 584 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 PKNOX1P55347 436 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 KRTAP1-1Q07627 177 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 CAPRIN1Q14444 709 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 VPS26BQ4G0F5 336 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 TCHHL1Q5QJ38 904 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF572Q7Z3I7 529 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 LCA5Q86VQ0 697 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 CTAGE4Q8IX94 777 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 GTPBP8Q8N3Z3 284 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 OR10D3Q8NH80 312 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 FBXW5Q969U6 566 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 ZBTB8AQ96BR9 441 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 C11orf24Q96F05 449 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 PAFAH2Q99487 392 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 LMF2Q9BU23 707 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 NINJ2Q9NZG7 142 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 DMGDHQ9UI17 866 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF180Q9UJW8 692 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 LAMP3Q9UQV4 416 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 RNF115Q9Y4L5 304 aa13.22□□□□□ -0.29
CCDC88B-201ENST00000301897 CADP27708 2225 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 SERTM1A2A2V5 107 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 RNF212BA8MTL3 300 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 RNF223E7ERA6 249 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 OVOL3O00110 214 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 UPK1AO00322 258 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ADAMDEC1O15204 470 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 PLAUP00749 431 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 SBK3P0C264 359 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 CHN1P15882 459 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 SLC6A8P48029 635 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 RAC1P63000 192 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 C2orf80Q0P641 193 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ZNF678Q5SXM1 525 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 TEX35Q5T0J7 233 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 HMBOX1Q6NT76 420 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 TMEM107Q6UX40 140 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ESPNLQ6ZVH7 1005 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 SLC22A9Q8IVM8 553 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 TMEM151AQ8N4L1 468 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 MMGT1Q8N4V1 131 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 FAM76AQ8TAV0 307 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ACTRT2Q8TDY3 377 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 GTPBP3Q969Y2 492 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 APIPQ96GX9 242 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 REG4Q9BYZ8 158 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 RTN4RQ9BZR6 473 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ESRP2Q9H6T0 727 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 FLRT3Q9NZU0 649 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 CLEC4AQ9UMR7 237 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 VDAC3Q9Y277 283 aa13.21□□□□□ -0.29
CCDC88B-201ENST00000301897 ESYT3A0FGR9 886 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 TRIM49D1C9J1S8 452 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 ALG1L2C9J202 215 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 CD3EP07766 207 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms