RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 HTR1FP30939 366 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SSR2P43308 183 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CCR6P51684 374 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CCR8P51685 355 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 ATP12AP54707 1039 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SNRPNP63162 240 aaKnown RBP11.58□□□□□ -0.56
NUP88-201ENST00000225696 REEP5Q00765 189 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 NTRK2Q16620 822 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 PGGHGQ32M88 737 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 RPTNQ6XPR3 784 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 ESPNLQ6ZVH7 1005 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 C12orf40Q86WS4 652 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LINC00471Q8N535 108 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CD99L2Q8TCZ2 262 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CHFRQ96EP1 664 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SCMH1Q96GD3 660 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 PPP1R16AQ96I34 528 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 BBS4Q96RK4 519 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 UBL7Q96S82 380 aaPredicted RBP11.58□□□□□ -0.56
NUP88-201ENST00000225696 PINK1Q9BXM7 581 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 BTBD1Q9H0C5 482 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 WASH6PQ9NQA3 447 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 ASB6Q9NWX5 421 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 B3GNT2Q9NY97 397 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 GLTPQ9NZD2 209 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SCN3AQ9NY46 2000 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CENPVL1A0A0U1RR11 272 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LRIT2A6NDA9 550 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SHOXO15266 292 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 KLF4O43474 513 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LATO43561 262 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 SLC19A2O60779 497 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 EFCAB14O75071 495 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 REM1O75628 298 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 KHKP50053 298 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 FXYD6P3P58550 94 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 CSNK1G2P78368 415 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 ACSM1Q08AH1 577 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 TRAM2Q15035 370 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 AGERQ15109 404 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LTB4RQ15722 352 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 TCEAL5Q5H9L2 206 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 FAM46CQ5VWP2 391 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LYPD4Q6UWN0 246 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 ZNF620Q6ZNG0 422 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 RRM2BQ7LG56 351 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 KIAA0907Q7Z7F0 614 aaPredicted RBP11.58□□□□□ -0.56
NUP88-201ENST00000225696 OAFQ86UD1 273 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 C17orf47Q8NEP4 570 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 OR4D9Q8NGE8 314 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 OR13C5Q8NGS8 318 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 OR52N1Q8NH53 320 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 RFKQ969G6 155 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 LINC00615Q96LM1 132 aaPredicted RBP11.58□□□□□ -0.56
NUP88-201ENST00000225696 OR7D2Q96RA2 312 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 PIGUQ9H490 435 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 BEX1Q9HBH7 125 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 EIF3KQ9UBQ5 218 aaKnown RBP11.58□□□□□ -0.56
NUP88-201ENST00000225696 CACNG2Q9Y698 323 aa11.58□□□□□ -0.56
NUP88-201ENST00000225696 REV3LO60673 3130 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 A0A0G2JK05 382 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 C17orf113A0A1B0GUU1 675 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 A0A1W2PPK0 400 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 BTN3A3O00478 584 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 LZTS3O60299 673 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 RGS9O75916 674 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 MPC2O95563 127 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ANKRD34CP0C6C1 535 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 GAAP10253 952 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 GIFP27352 417 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 NUDT1P36639 197 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 MC3RP41968 323 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 PITPNBP48739 271 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 AP2S1P53680 142 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 EPHA5P54756 1037 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 BTG1P62324 171 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 NTHL1P78549 312 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 MLC1Q15049 377 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 HBMQ6B0K9 141 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 FCRLBQ6BAA4 426 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ARL9Q6T311 187 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 DGLUCYQ7Z3D6 616 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 GDF7Q7Z4P5 450 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 DCUN1D3Q8IWE4 304 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ZNF687Q8N1G0 1237 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 PIGXQ8TBF5 258 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 KAT2AQ92830 837 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 NXPE3Q969Y0 559 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 LRRC3BQ96PB8 259 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ARHGDIGQ99819 225 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ALG8Q9BVK2 526 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 UBQLN3Q9H347 655 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 BABAM2Q9NXR7 383 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ZNF624Q9P2J8 865 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 SPEF1Q9Y4P9 236 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 A0A0G2JPF8 293 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 C7orf66A4D0T2 115 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 SLC9B1P1A6NJY1 282 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 HNRNPCL2B2RXH8 293 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 HNRNPCL3B7ZW38 293 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms