RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 OR2Y1Q8NGV0 311 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 OR5AK3PQ8NH89 298 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 GOT1L1Q8NHS2 421 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 FAM110BQ8TC76 370 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 PTPMT1Q8WUK0 201 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 PYDC1Q8WXC3 89 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 OR5P2Q8WZ92 322 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 PCSK5Q92824 1860 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 CTHRC1Q96CG8 243 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 LRRC58Q96CX6 371 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ELP4Q96EB1 424 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 FAM120BQ96EK7 910 aaKnown RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ZBED6CLQ96FA7 236 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 BBS4Q96RK4 519 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 WDR77Q9BQA1 342 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 GPATCH1Q9BRR8 931 aaKnown RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 CRB3Q9BUF7 120 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ZCCHC4Q9H5U6 513 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 EPS8L2Q9H6S3 715 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 EFCAB1Q9HAE3 211 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 CXorf21Q9HAI6 301 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 THSD1Q9NS62 852 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 CCM2LQ9NUG4 571 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 C14orf105Q9NVL8 296 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 MAT2BQ9NZL9 334 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF639Q9UID6 485 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 PSME2Q9UL46 239 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ENTPD4Q9Y227 616 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 FARSAQ9Y285 508 aaKnown RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 PTRH2Q9Y3E5 179 aaKnown RBP4.39□□□□□ -1.71
SF3B1-208ENST00000470268 MMACHCQ9Y4U1 282 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 HS3ST3B1Q9Y662 390 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF780BQ9Y6R6 833 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 AKAP13Q12802 2813 aa4.39□□□□□ -1.71
SF3B1-208ENST00000470268 KNTC1P50748 2209 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 A0A096LPI6 279 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C9J4A7 227 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SOCS6O14544 535 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TLX3O43711 291 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PRKNO60260 465 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PSMG1O95456 288 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 DDAH2O95865 285 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 IFNA16P05015 189 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 HEXBP07686 556 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ADRB1P08588 477 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RAB40ALP0C0E4 278 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 LIPCP11150 499 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NT5EP21589 574 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SLC6A2P23975 617 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CD82P27701 267 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NTSP30990 170 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 MPIP34949 423 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 GPR143P51810 404 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 MTPNP58546 118 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NFYCQ13952 458 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CEACAM7Q14002 265 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SERTAD2Q14140 314 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 EXOSC7Q15024 291 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TRMT5Q32P41 509 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TBC1D25Q3MII6 688 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RUNDC3AQ59EK9 446 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RABL3Q5HYI8 236 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 FHL5Q5TD97 284 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C1orf146Q5VVC0 180 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NANOGP8Q6NSW7 305 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 KIRREL2Q6UWL6 708 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF621Q6ZSS3 439 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 WDR53Q7Z5U6 358 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 VASH2Q86V25 355 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 KBTBD2Q8IY47 623 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OR2L13Q8N349 312 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 VPS37AQ8NEZ2 397 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PNPT1Q8TCS8 783 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZFP90Q8TF47 636 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RIT1Q92963 219 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 GIMAP5Q96F15 307 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OTUB1Q96FW1 271 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RBM18Q96H35 190 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NAF1Q96HR8 494 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RAX2Q96IS3 184 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ITCHQ96J02 903 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 MAGED4Q96JG8 741 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ANKRD27Q96NW4 1050 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CDRT15Q96T59 188 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CGREF1Q99674 301 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PCDHAC1Q9H158 963 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SERHL2Q9H4I8 314 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RMND5AQ9H871 391 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NANOGQ9H9S0 305 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RNPEPL1Q9HAU8 725 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PNO1Q9NRX1 252 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF223Q9UK11 482 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NXT1Q9UKK6 140 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 USP22Q9UPT9 525 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 DTX4Q9Y2E6 619 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SNX8Q9Y5X2 465 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PIEZO1Q92508 2521 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 LOC102723996A0A087X1L8 192 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RNF103-CHMP3A0A140T963 221 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms