RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TRIM33Q9UPN9 1127 aa17.92■□□□□ 0.46
CLN3-225ENST00000566824 FASNP49327 2511 aaKnown RBP17.92■□□□□ 0.46
CLN3-225ENST00000566824 B4DXG7 233 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 RFXANKO14593 260 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 ICOSLGO75144 302 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 GLSO94925 669 aaPredicted RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 IL33O95760 270 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 RFPL3SP0C7P2 107 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 MATN1P21941 496 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 IL12BP29460 328 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 PNLIPRP2P54317 469 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 KCNK10P57789 538 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 COX20Q5RI15 118 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 MSANTD1Q6ZTZ1 278 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 MSRB3Q8IXL7 192 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 COX18Q8N8Q8 333 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 PNPT1Q8TCS8 783 aaKnown RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 RNF138Q8WVD3 245 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 RAB8BQ92930 207 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 NEURL3Q96EH8 262 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 AURKBQ96GD4 344 aaPredicted RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 TTTY12Q9BZ98 90 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 OR51I1Q9H343 314 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 SAR1AQ9NR31 198 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 VPS4AQ9UN37 437 aa17.91■□□□□ 0.46
CLN3-225ENST00000566824 FAF1Q9UNN5 650 aaPredicted RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 UBR5O95071 2799 aaPredicted RBP17.91■□□□□ 0.46
CLN3-225ENST00000566824 GMNCA6NCL1 334 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 TTC36A6NLP5 189 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 TRIM3O75382 744 aaPredicted RBP17.9■□□□□ 0.46
CLN3-225ENST00000566824 KRT20P35900 424 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 UQCRFS1P47985 274 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 KCNJ2P63252 427 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 ALDH6A1Q02252 535 aaKnown RBP17.9■□□□□ 0.46
CLN3-225ENST00000566824 MRPL49Q13405 166 aaKnown RBP17.9■□□□□ 0.46
CLN3-225ENST00000566824 DECR1Q16698 335 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 TNFAIP8L2Q6P589 184 aaPredicted RBP17.9■□□□□ 0.46
CLN3-225ENST00000566824 RNF130Q86XS8 419 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 OR52N2Q8NGI0 321 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 DNAJB8Q8NHS0 232 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 ADAMTS15Q8TE58 950 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 ZFP90Q8TF47 636 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 ITCHQ96J02 903 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 SECISBP2Q96T21 854 aaKnown RBP17.9■□□□□ 0.46
CLN3-225ENST00000566824 STACQ99469 402 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 BTBD2Q9BX70 525 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 METTL7AQ9H8H3 244 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 DUSP22Q9NRW4 184 aa17.9■□□□□ 0.46
CLN3-225ENST00000566824 PRAMEF27A3QJZ7 478 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 ANKRD33BA6NCL7 494 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 PRAMEF25A6NGN4 478 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 NPIPA5E9PKD4 350 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 HS6ST1O60243 411 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 FADS1O60427 444 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 UTS2O95399 124 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 CBX6O95503 412 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 CRYABP02511 175 aaKnown RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 CELA3AP09093 270 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 OR12D1P0DN82 309 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 ZNF24P17028 368 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 CHI3L1P36222 383 aaPredicted RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 MVDP53602 400 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 GAS1P54826 345 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 POU6F2P78424 691 aaPredicted RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 EFR3AQ14156 821 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 GRAMD1BQ3KR37 738 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 C6orf10Q5SRN2 563 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 APOOLQ6UXV4 268 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 SPATA21Q7Z572 469 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 RETREG3Q86VR2 466 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 TMEM251Q8N6I4 163 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 FAM98AQ8NCA5 519 aaKnown RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 MIPOL1Q8TD10 442 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 JSRP1Q96MG2 331 aaPredicted RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 PHF12Q96QT6 1004 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 DOHHQ9BU89 302 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 NMUR2Q9GZQ4 415 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 AGPAT4Q9NRZ5 378 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 RYDENQ9NUL5 291 aaKnown RBP17.89■□□□□ 0.45
CLN3-225ENST00000566824 SLC25A37Q9NYZ2 338 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 NPIPA1Q9UND3 350 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 DNAJC13O75165 2243 aa17.89■□□□□ 0.45
CLN3-225ENST00000566824 NPIPA5A0A0B4J1W7 369 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 NPIPA7E9PJI5 369 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 ABCB7O75027 752 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 KCNH1O95259 989 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 ZIC2O95409 532 aaPredicted RBP17.88■□□□□ 0.45
CLN3-225ENST00000566824 ZCCHC18P0CG32 403 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 NPIPA8P0DM63 369 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 GNLYP22749 145 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 TRPC1P48995 793 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 RNF144AP50876 292 aaPredicted RBP17.88■□□□□ 0.45
CLN3-225ENST00000566824 PPIAP62937 165 aaKnown RBP17.88■□□□□ 0.45
CLN3-225ENST00000566824 IRX1P78414 480 aaPredicted RBP17.88■□□□□ 0.45
CLN3-225ENST00000566824 HSF1Q00613 529 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 PLGLB1Q02325 96 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 FUT5Q11128 374 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 KLF10Q13118 480 aa17.88■□□□□ 0.45
CLN3-225ENST00000566824 CMPK2Q5EBM0 449 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms