RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RFX3P48380 749 aa20■□□□□ 0.79
SNX1-210ENST00000560260 KHKP50053 298 aa20■□□□□ 0.79
SNX1-210ENST00000560260 GPR85P60893 370 aa20■□□□□ 0.79
SNX1-210ENST00000560260 PSPHP78330 225 aa20■□□□□ 0.79
SNX1-210ENST00000560260 POU6F2P78424 691 aaPredicted RBP20■□□□□ 0.79
SNX1-210ENST00000560260 PMP22Q01453 160 aa20■□□□□ 0.79
SNX1-210ENST00000560260 NFYCQ13952 458 aa20■□□□□ 0.79
SNX1-210ENST00000560260 DECR1Q16698 335 aa20■□□□□ 0.79
SNX1-210ENST00000560260 DDX59Q5T1V6 619 aaKnown RBP eCLIP20■□□□□ 0.79
SNX1-210ENST00000560260 PRAMEF20Q5VT98 475 aa20■□□□□ 0.79
SNX1-210ENST00000560260 CCDC197Q8NCU1 140 aa20■□□□□ 0.79
SNX1-210ENST00000560260 RCN3Q96D15 328 aa20■□□□□ 0.79
SNX1-210ENST00000560260 BTBD2Q9BX70 525 aa20■□□□□ 0.79
SNX1-210ENST00000560260 TRIM8Q9BZR9 551 aa20■□□□□ 0.79
SNX1-210ENST00000560260 IL1RL2Q9HB29 575 aa20■□□□□ 0.79
SNX1-210ENST00000560260 PCDHGB6Q9Y5F9 930 aa20■□□□□ 0.79
SNX1-210ENST00000560260 HRH3Q9Y5N1 445 aa20■□□□□ 0.79
SNX1-210ENST00000560260 BBIP1A8MTZ0 92 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 ADAM10O14672 748 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 ICOSLGO75144 302 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 ZIC2O95409 532 aaPredicted RBP19.99■□□□□ 0.79
SNX1-210ENST00000560260 ETFAP13804 333 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 IL12BP29460 328 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 PTGDSP41222 190 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 CYLC2Q14093 348 aaPredicted RBP19.99■□□□□ 0.79
SNX1-210ENST00000560260 SELPLGQ14242 412 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 CAPRIN1Q14444 709 aaKnown RBP19.99■□□□□ 0.79
SNX1-210ENST00000560260 PRR30Q53SZ7 412 aaPredicted RBP19.99■□□□□ 0.79
SNX1-210ENST00000560260 COQ5Q5HYK3 327 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 DCST2Q5T1A1 773 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 HEPHL1Q6MZM0 1159 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 NUP54Q7Z3B4 507 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 FBXW8Q8N3Y1 598 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 OR52N2Q8NGI0 321 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 BCAS4Q8TDM0 211 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 RNF138Q8WVD3 245 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 TMEM125Q96AQ2 219 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 NTNG2Q96CW9 530 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 SLC39A3Q9BRY0 314 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 NTNG1Q9Y2I2 539 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 CFAP46Q8IYW2 2715 aa19.99■□□□□ 0.79
SNX1-210ENST00000560260 CLIC1O00299 241 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 NDUFAB1O14561 156 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 ASNA1O43681 348 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 DCTN3O75935 186 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 KRT75O95678 551 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 PNLIPRP2P54317 469 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 TRMT5Q32P41 509 aaKnown RBP19.98■□□□□ 0.79
SNX1-210ENST00000560260 RUNDC3AQ59EK9 446 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 SULF2Q8IWU5 870 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 TMEM178AQ8NBL3 297 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 CHDHQ8NE62 594 aaPredicted RBP19.98■□□□□ 0.79
SNX1-210ENST00000560260 RP9Q8TA86 221 aaKnown RBP19.98■□□□□ 0.79
SNX1-210ENST00000560260 TAAR6Q96RI8 345 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 CGREF1Q99674 301 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 SACM1LQ9NTJ5 587 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.98■□□□□ 0.79
SNX1-210ENST00000560260 KLF13Q9Y2Y9 288 aaPredicted RBP19.98■□□□□ 0.79
SNX1-210ENST00000560260 GMEB1Q9Y692 573 aa19.98■□□□□ 0.79
SNX1-210ENST00000560260 C17orf51A8MQB3 221 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 TP53I11O14683 189 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 PEX1O43933 1283 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 ABCB7O75027 752 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 KRT20P35900 424 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 DNASE1L1P49184 302 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 MEOX1P50221 254 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 EFR3AQ14156 821 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 MAPK11Q15759 364 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.97■□□□□ 0.79
SNX1-210ENST00000560260 SLC22A10Q63ZE4 541 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 FAM91A1Q658Y4 838 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 RPUSD3Q6P087 351 aaKnown RBP19.97■□□□□ 0.79
SNX1-210ENST00000560260 GRHL3Q8TE85 626 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 XAGE5Q8WWM1 108 aa19.97■□□□□ 0.79
SNX1-210ENST00000560260 SECISBP2Q96T21 854 aaKnown RBP19.97■□□□□ 0.79
SNX1-210ENST00000560260 COL6A6A6NMZ7 2263 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 NPIPA5A0A0B4J1W7 369 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 PRAMEF25A6NGN4 478 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 DUXAA6NLW8 204 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 NPIPA7E9PJI5 369 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 P04436 131 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 NUDT7P0C024 238 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 NPIPA8P0DM63 369 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 CASP3P42574 277 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 RGNQ15493 299 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 GRAMD1BQ3KR37 738 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 MMEL1Q495T6 779 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 TMEM81Q6P7N7 255 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.96■□□□□ 0.79
SNX1-210ENST00000560260 ZNF843Q8N446 348 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 FITM2Q8N6M3 262 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 ANKFN1Q8N957 763 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 OR2M7Q8NG81 312 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 DNAJB8Q8NHS0 232 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 FRMD6Q96NE9 622 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 ANKRD27Q96NW4 1050 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 LRRC37BQ96QE4 947 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 SDF2Q99470 211 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 RTN4RQ9BZR6 473 aa19.96■□□□□ 0.79
SNX1-210ENST00000560260 GALNT9Q9HCQ5 603 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms