RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 HPNP05981 417 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 ALDOCP09972 364 aaKnown RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 ACP2P11117 423 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 EVI2BP34910 448 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 MAP3K8P41279 467 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 RFX3P48380 749 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 MRPS22P82650 360 aaKnown RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 PRR5P85299 388 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 TOMM20Q15388 145 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 DECR1Q16698 335 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 PGS1Q32NB8 556 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 VPS26BQ4G0F5 336 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 OGFOD2Q6N063 350 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 MAVSQ7Z434 540 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 WDR75Q8IWA0 830 aaKnown RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 ZNF808Q8N4W9 903 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 NATD1Q8N6N6 113 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 CDRT4Q8N9R6 151 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 WDSUB1Q8N9V3 476 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 CEP70Q8NHQ1 597 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 PSMA8Q8TAA3 256 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 NEIL3Q8TAT5 605 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 GPR151Q8TDV0 419 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 SLC9A6Q92581 669 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 ZNF75CPQ92670 426 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 SARAFQ96BY9 339 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 OTUB1Q96FW1 271 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 DPY30Q9C005 99 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 WDR55Q9H6Y2 383 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 CXorf36Q9H7Y0 433 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 NEUROD4Q9HD90 331 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 SPTAN1Q13813 2472 aaKnown RBP12.52□□□□□ -0.41
SHMT2-219ENST00000555563 NBPF19A0A087WUL8 3843 aa12.52□□□□□ -0.41
SHMT2-219ENST00000555563 TEX15Q9BXT5 2789 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 C15orf38-AP3S2A0A0A6YYH1 394 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 TRPC5OSA6NMA1 111 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 B4DXG7 233 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 KCNH1O95259 989 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 IL33O95760 270 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 COL8A1P27658 744 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 EPHA3P29320 983 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 SMSP52788 366 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 GAS1P54826 345 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 HBA1P69905 142 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 LASP1Q14847 261 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 CDSNQ15517 529 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 DUSP5Q16690 384 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 LSM12Q3MHD2 195 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 SPDYE7PQ495Y7 208 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 GXYLT1Q4G148 440 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 EIPR1Q53HC9 387 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 WIPI1Q5MNZ9 446 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 EXOSC6Q5RKV6 272 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 OR4F3Q6IEY1 312 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 GALNT10Q86SR1 603 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 CLECL1Q8IZS7 167 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 GOLGA6L1Q8N7Z2 621 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 SLC16A11Q8NCK7 471 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 JADE3Q92613 823 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 C16orf58Q96GQ5 468 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 YIPF4Q9BSR8 244 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 FAM120CQ9NX05 1096 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 FBXL2Q9UKC9 423 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 MRTO4Q9UKD2 239 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 ACAD8Q9UKU7 415 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 ABCG2Q9UNQ0 655 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 DNAJC13O75165 2243 aa12.51□□□□□ -0.41
SHMT2-219ENST00000555563 SPTBN1Q01082 2364 aaKnown RBP12.51□□□□□ -0.41
SHMT2-219ENST00000555563 FIGNL2A6NMB9 653 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 HMGB1P1B2RPK0 211 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 E9PBE3 544 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 SLCO1B7G3V0H7 640 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 CFLARO15519 480 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 SASH3O75995 380 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 UTS2O95399 124 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 HMGN2P05204 90 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 ALOX5P09917 674 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 ACVR2AP27037 513 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 SOAT1P35610 550 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 KIR3DL1P43629 444 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 CCT3P49368 545 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 PRIM2P49643 509 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 PSMD4P55036 377 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 WNT3P56703 355 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 CRYZQ08257 329 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 STX5Q13190 355 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 TP53BP2Q13625 1128 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 WLSQ5T9L3 541 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 OR5M10Q6IEU7 315 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 ZNF585AQ6P3V2 769 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 ZCCHC12Q6PEW1 402 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 YRDCQ86U90 279 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 PLCZ1Q86YW0 608 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 COX18Q8N8Q8 333 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 FAM83FQ8NEG4 500 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 OR8J2Q8NGG1 315 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 OR56A1Q8NGH5 318 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 OR5AK3PQ8NH89 298 aa12.5□□□□□ -0.41
SHMT2-219ENST00000555563 PIWIL2Q8TC59 973 aaKnown RBP12.5□□□□□ -0.41
SHMT2-219ENST00000555563 SFXN5Q8TD22 340 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms