RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC9A3P48764 834 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 ZNF57Q68EA5 555 aaPredicted RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 RPTNQ6XPR3 784 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 ZNF614Q8N883 585 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 CYB561A3Q8NBI2 242 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 NEIL3Q8TAT5 605 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 CDS1Q92903 461 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 ZNF707Q96C28 371 aaPredicted RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 MS4A6EQ96DS6 147 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 PPIL3Q9H2H8 161 aaKnown RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 APOBEC3BQ9UH17 382 aaKnown RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 FBXL4Q9UKA2 621 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 SIRT4Q9Y6E7 314 aaPredicted RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 COL4A3Q01955 1670 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 BTN3A3O00478 584 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 CPEP16870 476 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 ZNF24P17028 368 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 DDX5P17844 614 aaKnown RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 HIST1H1TP22492 207 aaPredicted RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 KRR1Q13601 381 aaKnown RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 OCLNQ16625 522 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 TMEM201Q5SNT2 666 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 IDNKQ5T6J7 187 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 C1orf94Q6P1W5 598 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 PLEKHM3Q6ZWE6 761 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 ETFBKMTQ8IXQ9 262 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 CADM2Q8N3J6 435 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 CCL4L1Q8NHW4 92 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 TMEM163Q8TC26 289 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 UFD1Q92890 307 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 TOX2Q96NM4 488 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 DPH1Q9BZG8 443 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 OR51V1Q9H2C8 321 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 WDR26Q9H7D7 661 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 WSB2Q9NYS7 404 aaPredicted RBP14.09□□□□□ -0.15
USP28-214ENST00000545540 DPP7Q9UHL4 492 aa14.09□□□□□ -0.15
USP28-214ENST00000545540 POLR1CO15160 346 aaPredicted RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 PAHP00439 452 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ASGR2P07307 311 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SLC1A3P43003 542 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 HCCSP53701 268 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 IRF4Q15306 451 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 GAB4Q2WGN9 574 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SIRT6Q8N6T7 355 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 RELTQ969Z4 430 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 LINC00615Q96LM1 132 aaPredicted RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 PRRC1Q96M27 445 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 MCHR1Q99705 422 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SLC22A4Q9H015 551 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ACAD8Q9UKU7 415 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SLC7A7Q9UM01 511 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ENTPD4Q9Y227 616 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SF3B6Q9Y3B4 125 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 ANKRD34BA5PLL1 514 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 H0Y8X5 98 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 UBXN7O94888 489 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ACP2P11117 423 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ATP5A1P25705 553 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 MAPK9P45984 424 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 RPS7P62081 194 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 TATDN3Q17R31 274 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 PLK5Q496M5 336 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 C2orf27AQ580R0 203 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ZNF438Q7Z4V0 828 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 NR2C2APQ86WQ0 139 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ASCC1Q8N9N2 400 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 C19orf18Q8NEA5 215 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 OR51L1Q8NGJ5 315 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 CITED4Q96RK1 184 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 RMI1Q9H9A7 625 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 PRDM7Q9NQW5 492 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ZFR2Q9UPR6 939 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 PCDHGB2Q9Y5G2 931 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 ARRDC5A6NEK1 342 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 PRODHO43272 600 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 PEPDP12955 493 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 IFI30P13284 250 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 OR10A3P58181 314 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 TEKQ02763 1124 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 DEFB134Q4QY38 66 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 TRIQKQ629K1 86 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SFTPA2Q8IWL1 248 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 SLC35A4Q96G79 324 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 PPP1R16AQ96I34 528 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 MARK1Q9P0L2 795 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 MRPS7Q9Y2R9 242 aaKnown RBP14.08□□□□□ -0.16
USP28-214ENST00000545540 ASB4Q9Y574 426 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 AP1M2Q9Y6Q5 423 aa14.08□□□□□ -0.16
USP28-214ENST00000545540 A0A0B4J203 849 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 LANCL1O43813 399 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 PLOD3O60568 738 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 DPTQ07507 201 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 SLC36A4Q6YBV0 504 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 OR14C36Q8NHC7 312 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 PFN4Q8NHR9 129 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 SLC7A6Q92536 515 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 COX14Q96I36 57 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 DHRS1Q96LJ7 313 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 FRMD6Q96NE9 622 aa14.07□□□□□ -0.16
USP28-214ENST00000545540 QRFPRQ96P65 431 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms