RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF525Q8N782 197 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 TADA1Q96BN2 335 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 CASD1Q96PB1 797 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 TMEM237Q96Q45 408 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PAXXQ9BUH6 204 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 HCAR1Q9BXC0 346 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 DEFB126Q9BYW3 111 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 NMNAT2Q9BZQ4 307 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 ELOVL4Q9GZR5 314 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 DUS2Q9NX74 493 aaKnown RBP2.5□□□□□ -2.01
VPS50-219ENST00000495039 GDAP2Q9NXN4 497 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 DPM3Q9P2X0 92 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 IL20RAQ9UHF4 553 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 CLEC4EQ9ULY5 219 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 IGHV3-35A0A0C4DH35 117 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 RNF103-CHMP3A0A140T963 221 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 TTC26A0AVF1 554 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 IMPA2O14732 288 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 ADAM12O43184 909 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SLC2A10O95528 541 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SDC1P18827 310 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 TSPAN8P19075 237 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PTPN6P29350 595 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PRDX2P32119 198 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 ACVR1BP36896 505 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 XCR1P46094 333 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 OR1D4P47884 311 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 ALDH3B2P48448 385 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SLC26A5P58743 744 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 MRPS6P82932 125 aaKnown RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 GABPB1Q06547 395 aaPredicted RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 PUDPQ08623 228 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 IL18R1Q13478 541 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SERTAD2Q14140 314 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PDIA5Q14554 519 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 CAMK4Q16566 473 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 QRICH1Q2TAL8 776 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PAN3Q58A45 887 aaKnown RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 MEDAGQ5VYS4 303 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SLC22A10Q63ZE4 541 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PNCKQ6P2M8 343 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 LEG1Q6P5S2 330 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PAQR9Q6ZVX9 377 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 NET1Q7Z628 596 aaPredicted RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 ELMOD2Q8IZ81 293 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 KDM8Q8N371 416 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 ARFGAP2Q8N6H7 521 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 CCDC26Q8TAB7 109 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 FCGR1BQ92637 280 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 NCLNQ969V3 563 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 C11orf24Q96F05 449 aaPredicted RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 EBF4Q9BQW3 602 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 WRAP53Q9BUR4 548 aaKnown RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 OPN3Q9H1Y3 402 aaPredicted RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 EXOSC3Q9NQT5 275 aaKnown RBP2.49□□□□□ -2.01
VPS50-219ENST00000495039 ELOVL2Q9NXB9 296 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 SPASTQ9UBP0 616 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 PLEKHA6Q9Y2H5 1048 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 USP6P35125 1406 aa2.49□□□□□ -2.01
VPS50-219ENST00000495039 UBE4BO95155 1302 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 E9PMD0 336 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 H3BTX0 84 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 SGK494L7N484 410 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 LGALS8O00214 317 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 SLC17A2O00624 439 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 TNFSF11O14788 317 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 SEC22BO75396 215 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 NOL4O94818 638 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 NDUFA7O95182 113 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 IGFBP1P08833 259 aaPredicted RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 ZNF17P17021 662 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 STARD6P59095 220 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 ZP4Q12836 540 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 KIAA0040Q15053 153 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 ZNF658Q5TYW1 1059 aaPredicted RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 BTNL3Q6UXE8 466 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 ZNF562Q6V9R5 426 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 Q7L0L9 218 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 APOBEC3FQ8IUX4 373 aaKnown RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 MCOLN2Q8IZK6 566 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 RNF148Q8N7C7 305 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 FAM71CQ8NEG0 241 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 NFAM1Q8NET5 270 aaPredicted RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 DQX1Q8TE96 717 aaKnown RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 ART4Q93070 314 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 RAB17Q9H0T7 212 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 RPAP3Q9H6T3 665 aaPredicted RBP2.48□□□□□ -2.01
VPS50-219ENST00000495039 VNN3Q9NY84 501 aa2.48□□□□□ -2.01
VPS50-219ENST00000495039 H0YL77 283 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 ALOX15BO15296 676 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 NUDT21O43809 227 aaKnown RBP2.47□□□□□ -2.01
VPS50-219ENST00000495039 ZNF853P0CG23 659 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 GAP43P17677 238 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 HTR5AP47898 357 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 EMDP50402 254 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 P2RY4P51582 365 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 ATXN3P54252 364 aaPredicted RBP2.47□□□□□ -2.01
VPS50-219ENST00000495039 ERVPABLB-1P60509 514 aa2.47□□□□□ -2.01
VPS50-219ENST00000495039 RPS6P62753 249 aaKnown RBP2.47□□□□□ -2.01
VPS50-219ENST00000495039 OVGP1Q12889 678 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms